Alternatives and similar repositories for Spectral_Flow_Workflow

Users that are interested in Spectral_Flow_Workflow are comparing it to the libraries listed below

• MangiolaLaboratory / sccomp
  Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆117Updated last week
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆140Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 10 months ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated 2 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆201Updated last month
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆134Updated 5 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆75Updated last month
• huayc09 / SeuratExtend
  ☆196Updated 2 weeks ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated 11 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆102Updated last week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆214Updated last week
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆183Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 4 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆98Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆72Updated last month
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 8 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆121Updated last year
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 months ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆97Updated last year
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 4 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆97Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆91Updated last week