HuanLab / BUDDYLinks
Bottom-up MS/MS interrogation & Experiment-specific global annotation
☆30Updated 9 months ago
Alternatives and similar repositories for BUDDY
Users that are interested in BUDDY are comparing it to the libraries listed below
Sorting:
- a python package for molecular formula analysis in MS-based small molecule studies☆31Updated 2 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆47Updated 3 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆39Updated 2 months ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆33Updated 4 years ago
- Metabolome Annotation Workflow☆25Updated last year
- Public Workflows at GNPS☆63Updated last year
- asari, metabolomics data preprocessing☆53Updated last month
- TidyMS: Tools for working with MS data in untargeted metabolomics☆55Updated last year
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆22Updated 10 months ago
- ☆27Updated last year
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Updated 5 months ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆28Updated 3 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆118Updated this week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆52Updated last week
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆18Updated 11 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated 3 weeks ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆14Updated last month
- ☆23Updated 5 months ago
- deep learning based prediction of structures and functional groups from MS/MS spectra☆11Updated 7 months ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Updated 3 years ago
- ☆69Updated last year
- Search spectral library with entropy similarity☆20Updated 4 months ago
- Spectral entropy for mass spectrometry data.☆32Updated last month
- A python client for the ClassyFire API☆16Updated 5 years ago
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆17Updated last year
- ☆36Updated 3 months ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated last year
- Workflow solutions for mass-spectrometry based non-target analysis.☆67Updated last week
- ☆25Updated last year
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last month