Alternatives and similar repositories for BioPhi-2021-publication

Users that are interested in BioPhi-2021-publication are comparing it to the libraries listed below

• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆34Updated 7 years ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 6 months ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• ChengfeiYan / PLMGraph-Inter
  A program fror inter-protein contact prediction from structures of interacting proteins
  ☆19Updated last year
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆37Updated 5 months ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 6 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆29Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆38Updated 2 weeks ago
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆28Updated 3 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 3 years ago
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 4 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 2 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated last month
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆34Updated last year
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• dahjan / DMS_opt
  ☆73Updated 5 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆71Updated last month
• dina-lab3D / NanoNet
  ☆50Updated 2 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago