Alternatives and similar repositories for scCAEs

Users that are interested in scCAEs are comparing it to the libraries listed below

• kaizhang / single-cell-benchmark
  ☆10Updated last year
• Roy-lab / scMTNI
  ☆27Updated 5 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• CABSEL / SINCERITIES
  SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…
  ☆13Updated 7 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• lanagarmire / Asgard
  ☆42Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago
• federicobocci / spliceJAC
  ☆10Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆34Updated last year
• PeterZZQ / scMoMaT
  ☆21Updated 11 months ago
• XLearning-SCU / MetaQ
  Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"
  ☆10Updated 6 months ago
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 7 months ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 10 months ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆15Updated 7 months ago
• madilabcode / scNET
  ☆42Updated 2 weeks ago
• MedicalGenomicsLab / deconvolution_benchmarking
  ☆21Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• yjgeno / GenKI
  ☆15Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 9 months ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆41Updated 8 months ago
• visze / sequence_cnn_models
  ☆13Updated 4 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• asrhou / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆17Updated 5 months ago