gushenweiz / scCAEs

Related projects ⓘ

Alternatives and complementary repositories for scCAEs

• Roy-lab / scMTNI
  ☆21Updated 6 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆26Updated 10 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago
• pqiu / cooccurrence_clustering
  ☆12Updated 4 years ago
• yutongo / TIGON
  ☆32Updated 9 months ago
• gitter-lab / SINGE
  Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
  ☆11Updated 4 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 9 months ago
• theislab / scTab
  ☆49Updated 2 months ago
• viannegao / ChromaFold
  ☆17Updated last month
• xiaoyeye / TFvelo
  ☆40Updated 6 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆26Updated 5 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆56Updated 3 months ago
• lanagarmire / Single-cell-drug-repositioning
  ☆14Updated 4 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• zhanglab-wbgcas / STGRNS
  ☆28Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆40Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆18Updated 2 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• YosefLab / velovi
  ☆36Updated last week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆34Updated 9 months ago
• WangShuxiong / SoptSC
  SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …
  ☆21Updated 3 years ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 4 years ago
• zhanglhbioinfor / DIRECT-NET
  ☆10Updated last year
• SunXQlab / ESICCC
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Updated 10 months ago
• lanagarmire / Asgard
  ☆40Updated 10 months ago
• SchubertLab / mvTCR
  ☆45Updated 3 weeks ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 8 months ago
• mkumar45 / syngeneic_scRNAseq
  ☆10Updated 5 years ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆28Updated 4 months ago