Repository for development of the genomic module of the CDM.
☆26Jun 14, 2019Updated 7 years ago
Alternatives and similar repositories for Genomic-CDM
Users that are interested in Genomic-CDM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Oncology Working Group Repository☆66May 8, 2026Updated 3 months ago
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆100Oct 3, 2023Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FHIR Ontop OMOP Implementation☆21May 8, 2024Updated 2 years ago
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- ☆32Jul 2, 2018Updated 8 years ago
- A collection of data sets for data entrepreneurs from the Centers for Medicare and Medicaid Services synthetic public use files☆16May 30, 2013Updated 13 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Basic setup and easy to follow templates to interact and search CogStack for data analysts☆12Sep 18, 2025Updated 10 months ago
- Transform the OMOP model to graph model☆28Dec 13, 2024Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆24Nov 1, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- python convenience functions for working with Stan models (via pystan)☆13Jan 3, 2018Updated 8 years ago
- ☆21Oct 24, 2020Updated 5 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆33Jun 6, 2025Updated last year
- A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.☆10Nov 2, 2022Updated 3 years ago
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Apr 14, 2026Updated 4 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 6 months ago
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Sep 9, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- File management system with metadata validation☆14Updated this week
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆49May 22, 2025Updated last year
- GraphRag vs Embeddings☆16Jul 14, 2024Updated 2 years ago
- Semantic search engine for OHDSI vocabulary☆20Jul 24, 2026Updated 3 weeks ago
- Code for 'Teaching with Interactive Data Visualization' site☆22May 6, 2015Updated 11 years ago
- Archived - new repo in README☆11Dec 12, 2024Updated last year
- ☆17Aug 3, 2026Updated last week
- AU Base FHIR Implementation Guide Source☆42Aug 6, 2026Updated last week
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆77Jun 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unlocking the Power of Health Data With a Modern Data Lakehouse☆29Mar 29, 2026Updated 4 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆94Jul 22, 2026Updated 3 weeks ago
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Jun 12, 2023Updated 3 years ago
- SATRE-Compliant TRE implementation on Kubernetes☆16Jul 7, 2026Updated last month
- DEAPP shiny App☆30Jun 8, 2022Updated 4 years ago
- ☆12Feb 27, 2024Updated 2 years ago