OHDSI / Genomic-CDM
Repository for development of the genomic module of the CDM.
☆20Updated 5 years ago
Alternatives and similar repositories for Genomic-CDM:
Users that are interested in Genomic-CDM are comparing it to the libraries listed below
- Python Phenopacket Tools☆15Updated 3 weeks ago
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆37Updated 5 months ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year
- Repository for the GA4GH phenopacket schema☆84Updated 4 months ago
- phenol: Phenotype ontology library☆23Updated 7 months ago
- Data dictionary for the GDC☆51Updated 4 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆30Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 2 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last year
- Ontology for consent codes and data use requirements☆67Updated 2 years ago
- THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build☆17Updated 4 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆25Updated 2 weeks ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆22Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆78Updated 3 weeks ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 5 months ago
- loinc2hpo Annotation Data☆24Updated 2 years ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆12Updated this week
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- ☆44Updated this week
- Internationalisation of the HPO content☆19Updated last year
- GA4GH Variation Representation Python Implementation☆53Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆86Updated last year
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- 🔥 FHIR 101 - A Practical Guide☆39Updated 4 years ago
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated last year
- Python library for extracting HPO encoded phenotypes from text☆28Updated 9 months ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated 3 weeks ago
- Monarch web application and API☆42Updated 5 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago
- Pheno4j: a graph based HPO to NGS database☆32Updated last year