OHDSI / Genomic-CDMLinks
Repository for development of the genomic module of the CDM.
☆20Updated 5 years ago
Alternatives and similar repositories for Genomic-CDM
Users that are interested in Genomic-CDM are comparing it to the libraries listed below
Sorting:
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆38Updated 8 months ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated 2 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- Repository for the GA4GH phenopacket schema☆87Updated 8 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated last week
- Python Phenopacket Tools☆14Updated 4 months ago
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated last year
- THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build☆17Updated 4 years ago
- phenol: Phenotype ontology library☆23Updated last month
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆29Updated last month
- loinc2hpo Annotation Data☆24Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆88Updated last year
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- Data Standards Hackathon for NGS based typing.☆13Updated 3 months ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 6 months ago
- ☆44Updated 2 weeks ago
- Python library for extracting HPO encoded phenotypes from text☆29Updated last year
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆22Updated 3 weeks ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆12Updated 3 months ago
- Ontology for consent codes and data use requirements☆67Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 9 months ago
- GA4GH Variation Representation Python Implementation☆56Updated last month
- A software toolkit for the interconversion of standard data models for phenotypic data☆14Updated 3 weeks ago
- Internationalisation of the HPO content☆19Updated 2 years ago
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 4 years ago
- 🔥 FHIR 101 - A Practical Guide☆41Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆15Updated last month
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- ☆32Updated 4 months ago