Repository for development of the genomic module of the CDM.
☆26Jun 14, 2019Updated 7 years ago
Alternatives and similar repositories for Genomic-CDM
Users that are interested in Genomic-CDM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated 2 years ago
- Oncology Working Group Repository☆63May 8, 2026Updated last month
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of data sets for data entrepreneurs from the Centers for Medicare and Medicaid Services synthetic public use files☆16May 30, 2013Updated 13 years ago
- ☆32Jul 2, 2018Updated 7 years ago
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- CWL for GDC DNASeq workflows☆24Mar 30, 2026Updated 2 months ago
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- A package for convenient downloading fhir resources in xml format and converting to R data frames☆39Jun 8, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographi…☆19Jul 28, 2021Updated 4 years ago
- python convenience functions for working with Stan models (via pystan)☆13Jan 3, 2018Updated 8 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- ☆21Oct 24, 2020Updated 5 years ago
- OMOP <-> FHIR mapper☆11Mar 6, 2023Updated 3 years ago
- tool for generating openEHR compositions from other formats☆16Feb 20, 2025Updated last year
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆33Jun 6, 2025Updated last year
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Apr 14, 2026Updated 2 months ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆30May 28, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 4 months ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Nov 1, 2019Updated 6 years ago
- Archived - new repo in README☆11Dec 12, 2024Updated last year
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Sep 9, 2024Updated last year
- File management system with metadata validation☆13Mar 25, 2026Updated 2 months ago
- Nextflow pipelines to process long read ONT and/or pacbio HiFi data☆18May 28, 2026Updated 2 weeks ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- Tools of Utilization and Cost in Healthcare☆14Nov 27, 2025Updated 6 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆49May 22, 2025Updated last year
- Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.☆27Feb 18, 2025Updated last year
- GraphRag vs Embeddings☆16Jul 14, 2024Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆46Dec 9, 2025Updated 6 months ago
- Code for 'Teaching with Interactive Data Visualization' site☆22May 6, 2015Updated 11 years ago
- ☆169Jan 22, 2026Updated 4 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆76Jun 17, 2025Updated 11 months ago