Alternatives and similar repositories for va-spec

Users that are interested in va-spec are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆93Updated last month
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated 3 weeks ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆101Updated last week
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated 3 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated last month
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• UW-GAC / gregor_data_models
  A repository for version control of consortium data model(s)
  ☆14Updated 2 weeks ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆46Updated 3 weeks ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆62Updated last month
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆70Updated 2 weeks ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆127Updated 2 weeks ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆77Updated last week
• varfish-org / varfish-server
  VarFish: comprehensive DNA variant analysis for diagnostics and research
  ☆48Updated this week
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆226Updated 3 weeks ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆83Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆86Updated last week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 4 months ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated this week
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated last week
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆68Updated last month
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 3 years ago
• griffithlab / civic-v2
  CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
  ☆24Updated this week
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆77Updated 7 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• ncbi / dbvar
  dbVar
  ☆41Updated 3 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆76Updated 5 months ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆64Updated last month
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated 9 months ago