Alternatives and similar repositories for va-spec

Users that are interested in va-spec are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆93Updated last month
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆59Updated this week
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated 3 weeks ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated 2 months ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 weeks ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 3 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆65Updated 5 months ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated 2 weeks ago
• UW-GAC / gregor_data_models
  A repository for version control of consortium data model(s)
  ☆14Updated 2 weeks ago
• varfish-org / varfish-server
  VarFish: comprehensive DNA variant analysis for diagnostics and research
  ☆48Updated last week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆76Updated 4 months ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆61Updated last week
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆77Updated this week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆127Updated this week
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆42Updated this week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated last week
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆34Updated this week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated last year
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆34Updated 3 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 4 months ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• monarch-initiative / Squirls
  Interpretable prioritization of splice variants in diagnostic next-generation sequencing
  ☆18Updated last year
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 weeks ago
• molgenis / capice
  ☆25Updated 8 months ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated 3 weeks ago