Morwey / ezreverseLinks
A Python Shiny project with Joachim Goedhart
☆20Updated last year
Alternatives and similar repositories for ezreverse
Users that are interested in ezreverse are comparing it to the libraries listed below
Sorting:
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆100Updated 2 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆21Updated last year
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- ☆34Updated 4 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆17Updated 7 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 6 months ago
- Utilities for formatting matplotlib figures☆31Updated 7 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆78Updated 2 weeks ago
- MS Word templates for a more readable BioRxiv product☆24Updated 7 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- ☆20Updated 6 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆39Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated last month
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- A Python interface to access neuroanatomical atlases☆164Updated this week
- Automated 3D cell detection in very large images☆218Updated this week
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- ☆45Updated 5 years ago
- Lectures for a napari training course☆51Updated 2 years ago
- ☆19Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated this week