genepi / cloudgeneLinks
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
☆39Updated last year
Alternatives and similar repositories for cloudgene
Users that are interested in cloudgene are comparing it to the libraries listed below
Sorting:
- High performance data storage for importing, querying and transforming variants.☆99Updated 4 months ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆41Updated this week
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 5 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated this week
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Updated 7 years ago
- WDL tools for parsing, type-checking, and more☆27Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆92Updated 2 weeks ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10Updated 8 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and report…☆79Updated last week
- A standalone and free application to explore genetics variations from VCF file☆107Updated last year
- Create WDL documentation using Markdown.☆28Updated 2 weeks ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- A tool kit to manage many variant on desktop computer☆13Updated 2 months ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆18Updated 5 years ago
- Dockerfile repository for Bioinformatics☆35Updated last year
- A secure encryption tool for genomic data☆62Updated last year
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Updated 6 years ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆27Updated last week
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Simulate short-reads datasets using probabilistic models☆11Updated 12 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆48Updated this week
- ☆11Updated 4 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Updated 6 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Moved to: https://github.com/maxplanck-ie/parkour2☆33Updated 3 years ago