davidliwei / mageck
Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
☆17Updated 9 years ago
Alternatives and similar repositories for mageck:
Users that are interested in mageck are comparing it to the libraries listed below
- Long read to rMATS☆31Updated last year
- Statistical power studies for multi-omics experiments.☆31Updated 2 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆14Updated 2 years ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 3 months ago
- workshop website on readthedocs☆19Updated last month
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- model-based understanding of single-cell CRISPR screening☆23Updated 3 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆18Updated 6 years ago
- 🧬 Gene analysis toolkit based on R☆56Updated 2 months ago
- ☆37Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆26Updated 5 months ago
- An R for fast and flexible DNA methylation analysis☆32Updated 8 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Identify and correct invalid gene symbols☆59Updated 4 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 3 years ago