Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
☆20Apr 27, 2015Updated 11 years ago
Alternatives and similar repositories for mageck
Users that are interested in mageck are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A next generation of CRISPR screening analysis tool☆15Updated this week
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆37Jun 8, 2026Updated 4 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆42Dec 16, 2020Updated 5 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Mar 21, 2019Updated 7 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- ☆12Sep 4, 2019Updated 7 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2☆21May 30, 2022Updated 4 years ago
- ☆20Sep 4, 2024Updated 2 years ago
- manually align specimens to annotated 3D spaces☆21May 10, 2023Updated 3 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆25Mar 22, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- practical course about lab methods in genome research☆24Feb 7, 2026Updated 8 months ago
- ☆10Nov 20, 2025Updated 11 months ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆13Oct 3, 2025Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- R package that makes linux environment modules available from R☆11Jan 13, 2023Updated 3 years ago
- Gene Set Enrichment Analysis and Over Representation Analysis analysis using R☆21Jun 20, 2019Updated 7 years ago
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Sep 19, 2018Updated 8 years ago
- Analysis tools for PhIP-seq experiments☆14Jan 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Nov 29, 2023Updated 2 years ago
- Applied Python Programming for Life Scientists☆28Feb 7, 2026Updated 8 months ago
- Please report only issues that concern the rendering of the official TYPO3 docs here. For help and support on TYPO3, please see: https:/…☆11Jan 21, 2020Updated 6 years ago
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 9 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆35Feb 22, 2018Updated 8 years ago
- scripts for RNA-Seq analysis☆29Feb 20, 2022Updated 4 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- A Visualized Shiny App to Evaluate Drug-Drug Interaction☆12Sep 15, 2015Updated 11 years ago
- Instructions for all major step in a plant genome sequencing project☆11Feb 23, 2026Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated 2 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 11 months ago
- A preliminary attempt at complete automation of bioinformatics☆12Feb 17, 2025Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆17Jul 17, 2021Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆49Jul 27, 2016Updated 10 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆38Oct 7, 2022Updated 4 years ago