fplaza / mgs-canopy-algorithm
Fork of the canopy clustering algorithm of Nielsen et al.
☆11Updated 8 years ago
Related projects: ⓘ
- ☆23Updated 6 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆29Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Updated last year
- Metagenomics microbial abundance quantification☆27Updated last year
- Latest MOCAT2 version☆18Updated 3 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Updated last year
- Statistical analysis for sparse high-throughput sequencing☆65Updated 6 months ago
- ☆13Updated 11 months ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆23Updated 10 months ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 3 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated last year
- catalog for long-read sequencing tools☆32Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 5 months ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- ☆25Updated 3 years ago
- profile basd Illumina pair-end Reads Simulator☆26Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Pair-End AssembeR☆25Updated 10 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago