fengzhanglab / CRISPR-Human_Variation_Nature_Medicine_manuscript
Code for Scott and Zhang, Nature Medicine manuscript on implications of human genetic variation for therapeutic genome editing
☆8Updated 7 years ago
Alternatives and similar repositories for CRISPR-Human_Variation_Nature_Medicine_manuscript:
Users that are interested in CRISPR-Human_Variation_Nature_Medicine_manuscript are comparing it to the libraries listed below
- Readme☆10Updated 5 years ago
- RNA-seq analysis scripts☆15Updated 3 years ago
- ☆18Updated 4 years ago
- alternative splicing analysis pipeline☆18Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- ☆17Updated 9 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- HOT regions paper☆11Updated 5 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- ☆25Updated 4 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- Pipeline to detect HLA disruption from WES and RNAseq data☆16Updated 2 months ago
- ☆21Updated 10 months ago
- ☆15Updated 8 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 3 weeks ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- ☆12Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year