dmitriydligach / starsem2018-patient-representations
Code for Dligach and Miller 2018 paper Learning Patient Representations from Text
☆10Updated last year
Alternatives and similar repositories for starsem2018-patient-representations:
Users that are interested in starsem2018-patient-representations are comparing it to the libraries listed below
- Crowdsourced ground truth for medical relation extraction.☆68Updated 5 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year
- ☆91Updated 5 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- ☆71Updated last year
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- ☆121Updated 6 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- BioBert Pytorch☆116Updated 2 years ago
- ☆33Updated 8 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆99Updated 4 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Updated 9 years ago
- ☆52Updated 4 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- ☆145Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 4 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago