phenopolis / pheno4j
Pheno4j: a graph based HPO to NGS database
☆32Updated last year
Alternatives and similar repositories for pheno4j:
Users that are interested in pheno4j are comparing it to the libraries listed below
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- ☆14Updated 2 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated last week
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Job Manager API and UI for interacting with asynchronous batch jobs and workflows.☆26Updated last month
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated last week
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated last week
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 3 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated last year
- BioThings API framework - Making high-performance API for biological annotation data☆46Updated last week
- A Teaching Engine for Genomics☆11Updated 3 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆29Updated this week
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Chart to aid in understanding mutations and their location on a gene.☆22Updated 2 years ago
- ☆35Updated last year
- Genomics datastructures using Apache Arrow☆21Updated 4 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆58Updated 2 weeks ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- a string to graph aligner☆41Updated 8 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 3 months ago
- SQL-like query language for the SAM/BAM file format☆27Updated last year
- ☆30Updated 8 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆63Updated 2 weeks ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- WebApp for DNA variants interpretation☆13Updated last week