Pheno4j: a graph based HPO to NGS database
☆34Jun 13, 2023Updated 3 years ago
Alternatives and similar repositories for pheno4j
Users that are interested in pheno4j are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆32Jul 6, 2022Updated 3 years ago
- Python API and React frontend for the Phenopolis Genomics Browser☆31Mar 12, 2026Updated 3 months ago
- ☆14Oct 18, 2023Updated 2 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Convert OWL to labeled property graph and import into Neo4J☆57Sep 7, 2021Updated 4 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 10 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Bioinformatics learning (for high performance computing, big data, and machine learning)☆19Jun 8, 2017Updated 9 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Dec 8, 2021Updated 4 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- The BioPAX Object Model, API and utilities implemented in Java☆28Jul 4, 2024Updated last year
- Neo4-js is a object-graph mapper for JavaScript and neo4j with full flow-type support.☆20Sep 5, 2018Updated 7 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Jun 7, 2026Updated last week
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.☆10Oct 19, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 10 months ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated last month
- ☆16Apr 25, 2017Updated 9 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 3 years ago
- ☆11Jan 28, 2019Updated 7 years ago
- ☆15Apr 2, 2025Updated last year
- Sandbox for playing with Neo4J and graph approaches to NLP☆12Jul 12, 2017Updated 8 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago