Pheno4j: a graph based HPO to NGS database
☆33Jun 13, 2023Updated 2 years ago
Alternatives and similar repositories for pheno4j
Users that are interested in pheno4j are comparing it to the libraries listed below
Sorting:
- Python API and React frontend for the Phenopolis Genomics Browser☆31Mar 27, 2024Updated last year
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- BioGraph: an online service and a graph DB for querying and analyzing bioinformatics resources☆11Oct 18, 2018Updated 7 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- The BioPAX Object Model, API and utilities implemented in Java☆27Jul 4, 2024Updated last year
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Template for creating a BioCypher-driven knowledge graph☆13Jan 15, 2026Updated last month
- ☆12Dec 8, 2021Updated 4 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 7 months ago
- ☆16Apr 25, 2017Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Data portal for submitting and viewing genomic data☆14Feb 13, 2026Updated 2 weeks ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆18Jun 14, 2024Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Snakemake tutorial materials☆19Mar 9, 2020Updated 5 years ago
- ☆82Feb 22, 2022Updated 4 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Clinical trial designs and methods in Python☆22Nov 3, 2016Updated 9 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 4 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Introduction to Snakemake for Bioinformatics☆22Feb 24, 2026Updated last week
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- ☆18May 19, 2022Updated 3 years ago
- Bioinformatics learning (for high performance computing, big data, and machine learning)☆19Jun 8, 2017Updated 8 years ago