phenopolis / pheno4j
Pheno4j: a graph based HPO to NGS database
☆32Updated last year
Alternatives and similar repositories for pheno4j
Users that are interested in pheno4j are comparing it to the libraries listed below
Sorting:
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated 2 months ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Repository for development of the genomic module of the CDM.☆20Updated 5 years ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated last week
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated last week
- WebApp for DNA variants interpretation☆13Updated this week
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 2 months ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- non-redundant, compressed, journalled, file-based storage for biological sequences☆41Updated last month
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Chart to aid in understanding mutations and their location on a gene.☆22Updated 2 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- GA4GH Variation Representation Python Implementation☆56Updated 2 weeks ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 4 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated last month
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- ☆14Updated last month
- Aligner for sequencing data☆18Updated 7 years ago
- Deprecated. See new version: https://github.com/statgen/bravo_api - BRowse All Variants Online☆9Updated 2 years ago
- Data Standards Hackathon for NGS based typing.☆13Updated 3 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- This BLENDER has been sunsetted☆16Updated 7 months ago
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- A catalogue of docker images for NGS data analysis tools☆9Updated 5 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year