Alternatives and similar repositories for chipimputation:

Users that are interested in chipimputation are comparing it to the libraries listed below

• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• evanfloden / tuxedo-nf
  A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
  ☆10Updated 6 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆55Updated 7 years ago
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆22Updated 6 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 8 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated 6 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆72Updated 5 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆72Updated 3 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 8 months ago
• dantaki / SV2
  Support Vector Structural Variation Genotyper
  ☆58Updated 4 years ago
• CGGOxford / Opossum
  Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
  ☆28Updated 6 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago
• fakedrtom / SVAFotate
  ☆39Updated 6 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆30Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 3 months ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 4 months ago
• mskilab-org / JaBbA
  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
  ☆56Updated last week
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆49Updated 8 months ago
• HadrienG / nanoflow
  De novo assembly of nanopore reads using nextflow
  ☆20Updated 4 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆62Updated 6 months ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 2 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆138Updated 10 months ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 3 weeks ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago