h3abionet / chipimputationLinks
Genotype Imputation Pipeline for H3Africa
☆24Updated last year
Alternatives and similar repositories for chipimputation
Users that are interested in chipimputation are comparing it to the libraries listed below
Sorting:
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- See the main fork of this repository here >>>☆39Updated last month
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 7 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 7 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 5 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- phasing and Allele Specific Expression from RNA-seq