h3abionet / chipimputationLinks
Genotype Imputation Pipeline for H3Africa
☆24Updated last year
Alternatives and similar repositories for chipimputation
Users that are interested in chipimputation are comparing it to the libraries listed below
Sorting:
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 5 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- A tool for profiling long STRs from short reads☆103Updated 4 years ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆24Updated 4 months ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- See the main fork of this repository here >>>☆38Updated 7 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Data and information about the Polaris study☆54Updated 6 years ago
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆31Updated 2 months ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Somatic structural variant caller for long-read data☆85Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 4 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆90Updated this week
- Allele-specific alignment sorting☆61Updated 2 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago