Genotype Imputation Pipeline for H3Africa
☆25Nov 5, 2024Updated last year
Alternatives and similar repositories for chipimputation
Users that are interested in chipimputation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 6 years ago
- GWAS Pipeline for H3Africa☆115Mar 12, 2026Updated last month
- TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used togeth…☆11Nov 6, 2025Updated 5 months ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆10Aug 29, 2018Updated 7 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 2 years ago
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Dec 14, 2022Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Notes on SNP-related tools and genome variation analysis☆29Aug 30, 2025Updated 8 months ago
- ☆14Jun 3, 2022Updated 3 years ago
- List of IARC bioinformatics pipelines and resources☆56Apr 23, 2026Updated last week
- An easy-to-use way for running Galaxy workflows.☆20Nov 19, 2019Updated 6 years ago
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Apr 21, 2026Updated 2 weeks ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- ☆12Jun 12, 2023Updated 2 years ago
- an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species☆14Jul 22, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Oct 24, 2020Updated 5 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- A flexible Nextflow-based framework for the definition of sequencing data processing pipelines☆44Nov 7, 2019Updated 6 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- ☆10Mar 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- ☆12Feb 16, 2026Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Apr 2, 2026Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year