Alternatives and similar repositories for chipimputation

Users that are interested in chipimputation are comparing it to the libraries listed below

• evanfloden / tuxedo-nf
  A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
  ☆10Updated 7 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆98Updated last year
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 2 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• Illumina / Cyrius
  A tool to genotype CYP2D6 with WGS data
  ☆53Updated last year
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆80Updated last year
• nf-core / bamtofastq
  Converts bam or cram files to fastq format and does quality control.
  ☆27Updated last week
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆60Updated 2 years ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 6 months ago
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• guigolab / chip-nf
  An automated ChIP-seq pipeline using Nextfow
  ☆18Updated 2 years ago
• Illumina / GraphAlignmentViewer
  ☆35Updated 3 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆72Updated 10 months ago
• Illumina / SMNCopyNumberCaller
  A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS
  ☆49Updated last year
• gringer / bioinfscripts
  Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
  ☆69Updated 5 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆56Updated 8 years ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆71Updated 7 years ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆53Updated 5 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 7 months ago
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆82Updated 2 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 5 months ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆106Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆70Updated last week
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆87Updated 8 months ago
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆44Updated 7 months ago
• lifebit-ai / DeepVariant
  Deep Variant as a Nextflow pipeline
  ☆30Updated 4 years ago