eudoraleer / HTCA
HTCA Analysis Tools
☆4Updated 2 years ago
Alternatives and similar repositories for HTCA:
Users that are interested in HTCA are comparing it to the libraries listed below
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆16Updated last year
- ☆9Updated 7 years ago
- ☆17Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆15Updated 3 years ago
- ☆22Updated 4 months ago
- ☆24Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Pseudotime Analysis for Bulk Data☆14Updated 6 months ago
- ☆45Updated 6 months ago
- Network analysis for multi-omics☆13Updated last month
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆29Updated 8 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- ☆20Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆19Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 8 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Analysis and visualization of RNA-Seq results☆26Updated last month
- bioinformatics R test code☆13Updated 2 years ago
- Calculating Tumor microenvironment score☆28Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago