DECIPHER-genomics / Genoverse

Related projects: ⓘ

• mozack / abra2
  ABRA2
  ☆90Updated last year
• svviz / svviz
  Read visualizer for structural variants
  ☆80Updated 6 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆106Updated 3 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆73Updated last month
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 3 weeks ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆116Updated last year
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆143Updated last year
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆137Updated last year
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆61Updated 11 months ago
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆71Updated this week
• Illumina / Polaris
  Data and information about the Polaris study
  ☆52Updated 4 years ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆55Updated 3 years ago
• parklab / bamsnap
  ☆110Updated 2 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆84Updated last year
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆187Updated 8 months ago
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆71Updated 3 months ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆105Updated 2 months ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆88Updated 7 months ago
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆141Updated last year
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆76Updated last year
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆75Updated last year
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆83Updated 3 years ago
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆94Updated 2 years ago
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆113Updated 5 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆190Updated 3 years ago
• WGLab / Phen2Gene
  Phenotype driven gene prioritization for HPO
  ☆43Updated 3 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆51Updated last year
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆108Updated 3 years ago