A benchmark suite to study the performance characteristics of genomics applications
☆32Oct 21, 2024Updated last year
Alternatives and similar repositories for genomicsbench
Users that are interested in genomicsbench are comparing it to the libraries listed below
Sorting:
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆17Jan 12, 2024Updated 2 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 5 years ago
- ☆17Mar 21, 2023Updated 2 years ago
- Darwin: A co-processor for long read alignment☆16Apr 5, 2019Updated 6 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 5 months ago
- ☆15Aug 16, 2025Updated 6 months ago
- ☆12Dec 26, 2018Updated 7 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆15Feb 3, 2026Updated last month
- Bioinformatics benchmarking package, based on the original BioBench developed by Albayraktaroglu et al, 2005☆13Dec 13, 2018Updated 7 years ago
- ☆17Jul 25, 2025Updated 7 months ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆32Dec 19, 2022Updated 3 years ago
- High-performance automata-processing engines are traditionally evaluated using a limited set of regular expression rulesets. While regula…☆35Nov 20, 2023Updated 2 years ago
- VASim is a virtual homogeneous non-deterministic finite automata automata simulator and transformation tool. VASim can parse, transform, …☆36May 17, 2024Updated last year
- This is no longer maintained. Please visit StreamHPC's fork https://github.com/StreamHPC/FinanceBench☆43Apr 20, 2018Updated 7 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- A benchmarking suite for heterogeneous systems. The primary goal of this project is to improve and update aspects of existing benchmarkin…☆43Jan 30, 2026Updated last month
- Drishti provides I/O insights to help you improve your application's I/O performance.☆23Feb 18, 2026Updated 2 weeks ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆21Mar 5, 2019Updated 6 years ago
- Accelerated kernel library for genomics☆109Jul 7, 2025Updated 7 months ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- Create and deploy virtual-experiments - co-processing computational workflows☆10Jan 28, 2026Updated last month
- A benchmark framework for Pytorch☆33Mar 14, 2025Updated 11 months ago
- DAMOV is a benchmark suite and a methodical framework targeting the study of data movement bottlenecks in modern applications. It is inte…☆87Jul 27, 2023Updated 2 years ago
- An R package implementing computational models of Eriksen flanker task performance.☆10Sep 19, 2025Updated 5 months ago
- Memory Topology for GPUs☆17Feb 13, 2026Updated 2 weeks ago
- The simulator for the Next-Generation Championship in Branch Prediction (CBP-NG)☆26Feb 25, 2026Updated last week
- Course material for CB2030☆13Feb 18, 2026Updated 2 weeks ago
- PARADIS, a lightweight and flexible weather forecast model that tries to Keep It Simple.☆26Feb 4, 2026Updated last month
- Benchmarks of Deep Neural Networks☆39May 19, 2021Updated 4 years ago
- ext_mpi_collectives☆11Apr 1, 2025Updated 11 months ago
- A tracing tool to analyze the I/O behavior of a program.☆12Sep 25, 2019Updated 6 years ago
- [DEPRECATED] Moved to ROCm/rocm-systems repo☆165Feb 16, 2026Updated 2 weeks ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- Persistent Memory Programming book examples☆41Nov 4, 2024Updated last year
- ☆11Aug 5, 2020Updated 5 years ago
- Code for paper "Beyond Closure Models: Learning Chaotic Systems via Physics-Informed Neural Operators".☆14Dec 24, 2025Updated 2 months ago
- Argonne Leadership Computing Facility OpenCL tutorial☆10Aug 22, 2025Updated 6 months ago