A benchmark suite to study the performance characteristics of genomics applications
☆32Oct 21, 2024Updated last year
Alternatives and similar repositories for genomicsbench
Users that are interested in genomicsbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 5 years ago
- ☆17Jul 25, 2025Updated 7 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- Darwin: A co-processor for long read alignment☆16Apr 5, 2019Updated 6 years ago
- Software and Hardware Characterization of Streaming Graph Analytics Workloads☆14Aug 15, 2022Updated 3 years ago
- Bioinformatics benchmarking package, based on the original BioBench developed by Albayraktaroglu et al, 2005☆13Dec 13, 2018Updated 7 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Dec 19, 2022Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- ☆20Nov 14, 2022Updated 3 years ago
- A tracing tool to analyze the I/O behavior of a program.☆12Sep 25, 2019Updated 6 years ago
- VASim is a virtual homogeneous non-deterministic finite automata automata simulator and transformation tool. VASim can parse, transform, …☆36May 17, 2024Updated last year
- High-performance automata-processing engines are traditionally evaluated using a limited set of regular expression rulesets. While regula…☆35Nov 20, 2023Updated 2 years ago
- ☆15Aug 16, 2025Updated 7 months ago
- REAPR (Reconfigurable Engine for Automata Processing) is a general-purpose framework for accelerating automata processing applications su…☆16Jun 29, 2019Updated 6 years ago
- Spectre variant 1 exploitation via PRIME+PROBE☆10May 22, 2019Updated 6 years ago
- Artifact for "DX100: A Programmable Data Access Accelerator for Indirection (ISCA 2025)" paper☆17Nov 6, 2025Updated 4 months ago
- A benchmarking suite for heterogeneous systems. The primary goal of this project is to improve and update aspects of existing benchmarkin…☆43Jan 30, 2026Updated last month
- ☆11Sep 25, 2021Updated 4 years ago
- Infiniband RDMA Examples using libibverbs and librdmacm for learning purposes☆12Sep 24, 2021Updated 4 years ago
- Drishti provides I/O insights to help you improve your application's I/O performance.☆23Mar 3, 2026Updated 3 weeks ago
- Pyevolve☆14Dec 8, 2018Updated 7 years ago
- ☆22Sep 16, 2021Updated 4 years ago
- OpenGraph is an open-source graph processing benchmarking suite written in pure C/OpenMP.☆12Apr 27, 2024Updated last year
- ☆13May 22, 2023Updated 2 years ago
- pLUTo is a DRAM-based Processing-using-Memory architecture that leverages the high density of DRAM to enable the massively parallel stori…☆18Jan 12, 2023Updated 3 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆15Feb 3, 2026Updated last month
- Accelerated kernel library for genomics☆111Jul 7, 2025Updated 8 months ago
- ☆12Oct 25, 2022Updated 3 years ago
- Meta-Repository for Bespoke Silicon Group's Manycore Architecture (A.K.A HammerBlade)☆44Jun 16, 2025Updated 9 months ago
- ☆17Aug 25, 2022Updated 3 years ago
- Repository for the tools and non-commercial data used for the "Accelerator wall" paper.☆52Jan 26, 2019Updated 7 years ago
- Proxy app for Nek5000☆13Mar 20, 2018Updated 8 years ago
- Sharing the codebase and steps for artifact evaluation for ISCA 2023 paper☆15Feb 20, 2024Updated 2 years ago
- Proof-of-concept for I See Dead Micro-Ops transient execution attack☆14Nov 3, 2021Updated 4 years ago
- 3D-FPIM: An Extreme Energy-Efficient DNN Acceleration System Using 3D NAND Flash-Based In-Situ PIM Unit (MICRO 2022)☆20May 19, 2023Updated 2 years ago
- A benchmark suite for Graph Machine Learning☆19Oct 8, 2024Updated last year
- This is the respository that holds the artifacts of MICRO'23 -- Demystifying CXL Memory with True CXL-Ready Systems and CXL Memory Device…☆53Mar 17, 2024Updated 2 years ago
- ☆21Mar 12, 2026Updated last week