TurakhiaLab / TALCOLinks
☆14Updated 9 months ago
Alternatives and similar repositories for TALCO
Users that are interested in TALCO are comparing it to the libraries listed below
Sorting:
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated 9 months ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 7 years ago
- Co-processor for whole genome alignment☆13Updated 5 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Updated 2 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- generating hardware accelerators for pangenomic graph queries☆38Updated last week
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- Darwin: A co-processor for long read alignment☆16Updated 6 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 9 months ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆14Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆22Updated 2 years ago
- Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly☆17Updated last year
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆20Updated last year
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆19Updated 6 years ago
- A PIM instrumentation, compilation, execution, simulation, and evaluation repository for BLIMP-style architectures.☆18Updated 3 years ago
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆27Updated 3 months ago
- A graph linear algebra overlay☆51Updated 2 years ago
- A Generic Distributed Auto-Tuning Infrastructure☆22Updated 4 years ago
- ☆65Updated 4 years ago
- HeteroHalide: From Image Processing DSL to Efficient FPGA Acceleration☆15Updated 4 years ago
- ☆11Updated 3 years ago
- PIM-ML is a benchmark for training machine learning algorithms on the UPMEM architecture, which is the first publicly-available real-worl…☆24Updated 7 months ago
- SSR: Spatial Sequential Hybrid Architecture for Latency Throughput Tradeoff in Transformer Acceleration (Full Paper Accepted in FPGA'24)☆32Updated this week
- Falcon Merlin Compiler☆41Updated 5 years ago
- ☆18Updated last month
- ☆23Updated 3 years ago
- A new DRAM substrate that mitigates the excessive energy consumption from both (i) transmitting unused data on the memory channel and (i…☆12Updated 11 months ago
- ☆10Updated 4 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated 2 years ago