TurakhiaLab / TALCOLinks
☆15Updated 4 months ago
Alternatives and similar repositories for TALCO
Users that are interested in TALCO are comparing it to the libraries listed below
Sorting:
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated last year
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 7 years ago
- Co-processor for whole genome alignment☆13Updated 5 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆32Updated 3 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆53Updated 2 years ago
- generating hardware accelerators for pangenomic graph queries☆39Updated this week
- Darwin: A co-processor for long read alignment☆16Updated 6 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated last year
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Updated 3 years ago
- Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly☆16Updated last year
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆18Updated 6 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22Updated last year
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆22Updated 2 years ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆14Updated 3 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆21Updated 6 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated 3 years ago
- ☆70Updated 4 years ago
- A graph linear algebra overlay☆51Updated 2 years ago
- Starlight: A Kernel Optimizer for GPU Processing☆16Updated 2 years ago
- A PIM instrumentation, compilation, execution, simulation, and evaluation repository for BLIMP-style architectures.☆18Updated 3 years ago
- UPMEM LLM Framework allows profiling PyTorch layers and functions and simulate those layers/functions with a given hardware profile.☆37Updated 5 months ago
- TransPimLib is a library for transcendental (and other hard-to-calculate) functions in general-purpose PIM systems, TransPimLib provides …☆15Updated 2 years ago
- Sparse kernels for GNNs based on TVM☆17Updated 5 years ago
- SparseP is the first open-source Sparse Matrix Vector Multiplication (SpMV) software package for real-world Processing-In-Memory (PIM) ar…☆77Updated 3 years ago
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆17Updated last year
- SSR: Spatial Sequential Hybrid Architecture for Latency Throughput Tradeoff in Transformer Acceleration (Full Paper Accepted in FPGA'24)☆35Updated this week
- PIMeval simulator and PIMbench suite☆42Updated last month
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆32Updated 8 months ago
- ☆18Updated 2 months ago
- The simulator for SPADA, an SpGEMM accelerator with adaptive dataflow☆46Updated 2 years ago