Scripts for analysis of genome-wide perturb-seq in primary human T cells
☆27Aug 28, 2026Updated last month
Alternatives and similar repositories for GWT_perturbseq_analysis_2025
Users that are interested in GWT_perturbseq_analysis_2025 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Updated this week
- ☆12Sep 28, 2026Updated last week
- Benchmark for agentic single cell data analysis☆36Jun 10, 2026Updated 4 months ago
- Robust and efficient analysis of single-cell perturbation studies☆16Sep 24, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A repository for reproducing experiments from the TxPert paper☆52Mar 25, 2026Updated 6 months ago
- ☆42Jan 19, 2026Updated 8 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆18Feb 23, 2026Updated 7 months ago
- ☆54Jun 16, 2025Updated last year
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated 3 months ago
- Multigrate: multiomic data integration for single-cell genomics☆35Updated this week
- ☆19May 29, 2026Updated 4 months ago
- Single-cell perturbation analysis☆347Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17Jul 8, 2024Updated 2 years ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆39Jan 24, 2025Updated last year
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 21, 2026Updated 2 weeks ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated last year
- Conveniently process a dictionary of anndatas☆23Sep 25, 2026Updated 2 weeks ago
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 11 months ago
- ☆65Aug 23, 2026Updated last month
- DeepTTC: a transformer-based model for predicting cancer drug response☆21Jun 1, 2023Updated 3 years ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- ☆102Aug 12, 2024Updated 2 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆155Aug 14, 2024Updated 2 years ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆165Aug 25, 2026Updated last month
- ☆30Oct 4, 2024Updated 2 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28Jan 10, 2025Updated last year
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- ☆75Jan 14, 2026Updated 8 months ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆124Mar 16, 2026Updated 6 months ago
- ☆10Nov 29, 2022Updated 3 years ago
- Differential Evolution Algorithm which uses Non-dominated Sorting for Multi-Objective Optimization☆10Mar 11, 2020Updated 6 years ago
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆15Dec 16, 2023Updated 2 years ago