Scripts for analysis of genome-wide perturb-seq in primary human T cells
☆18Jun 1, 2026Updated last month
Alternatives and similar repositories for GWT_perturbseq_analysis_2025
Users that are interested in GWT_perturbseq_analysis_2025 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago
- ☆13Apr 10, 2026Updated 3 months ago
- Benchmark for agentic single cell data analysis☆21Jun 10, 2026Updated last month
- Robust and efficient analysis of single-cell perturbation studies☆15Mar 18, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A repository for reproducing experiments from the TxPert paper☆41Mar 25, 2026Updated 3 months ago
- ☆42Jan 19, 2026Updated 6 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 4 months ago
- ☆13Jun 4, 2023Updated 3 years ago
- ☆51Jun 16, 2025Updated last year
- Causal Differential Networks (ICML 2025)☆15Jun 3, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated last month
- Multigrate: multiomic data integration for single-cell genomics☆34Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19May 29, 2026Updated last month
- Single-cell perturbation analysis☆338Updated this week
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- A Predictive World Model of the Transcriptome☆34Oct 18, 2025Updated 9 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆37Jan 24, 2025Updated last year
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 9 months ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package to run Bayesian MMRMs using {brms}☆24Apr 15, 2026Updated 3 months ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆37Jun 15, 2026Updated last month
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Conveniently process a dictionary of anndatas☆24Apr 17, 2026Updated 3 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 8 months ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆21Jun 1, 2023Updated 3 years ago
- ☆99Aug 12, 2024Updated last year
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆16May 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆158Jun 3, 2026Updated last month
- ☆69Jan 14, 2026Updated 6 months ago
- ☆30Oct 4, 2024Updated last year
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 6 years ago
- ☆26Jan 10, 2025Updated last year
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆106Mar 16, 2026Updated 4 months ago