Robust and efficient analysis of single-cell perturbation studies
☆15Mar 18, 2026Updated 4 months ago
Alternatives and similar repositories for PerTurbo
Users that are interested in PerTurbo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 7, 2026Updated last week
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 3 months ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆17May 12, 2026Updated 2 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Updated this week
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆18Jun 1, 2026Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆79Jun 4, 2026Updated last month
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 5 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- ☆17Jan 30, 2026Updated 5 months ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 9 months ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated last month
- Basic OpenMendel tutorials☆11Jul 24, 2022Updated 3 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Preserving Clusters and Correlations: Dimensionality reduction with exceptional high global structure preservation☆17Dec 23, 2025Updated 6 months ago
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 8 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 8 months ago
- Code and example of the D-SPIN framework☆39May 12, 2026Updated 2 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated last month
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- An R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.☆14May 19, 2026Updated 2 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Python bindings for SingleR☆16May 6, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- A federated implementation of PyDESeq2, based on Substra.☆18Jul 13, 2026Updated last week
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆12Dec 22, 2025Updated 6 months ago
- VCF Zarr Specification☆17Jun 4, 2026Updated last month
- ☆29Sep 4, 2023Updated 2 years ago
- Isoform-level spatial transcriptomics analysis☆17May 3, 2026Updated 2 months ago
- Visualize 3D ST data in Jupyter☆15Jun 16, 2026Updated last month