Robust and efficient analysis of single-cell perturbation studies
☆15Aug 4, 2026Updated this week
Alternatives and similar repositories for PerTurbo
Users that are interested in PerTurbo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 3 months ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆18May 12, 2026Updated 2 months ago
- ☆16Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- parallel differential expression for single-cell perturbation sequencing☆25Jul 14, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Jul 29, 2026Updated last week
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆19Jun 1, 2026Updated 2 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆80Jun 4, 2026Updated 2 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆37Mar 1, 2026Updated 5 months ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 6 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- ☆17Jan 30, 2026Updated 6 months ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 9 months ago
- ordered multinomial models☆12Updated this week
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆20Oct 10, 2024Updated last year
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 5 months ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 9 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- Preserving Clusters and Correlations: Dimensionality reduction with exceptional high global structure preservation☆18Dec 23, 2025Updated 7 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated 2 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- An R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.☆14May 19, 2026Updated 2 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago
- Code and example of the D-SPIN framework☆39Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated 2 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated last month
- ☆38Jun 8, 2026Updated 2 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 6 months ago
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆12Dec 22, 2025Updated 7 months ago
- VCF Zarr Specification☆18Jun 4, 2026Updated 2 months ago
- Isoform-level spatial transcriptomics analysis☆17May 3, 2026Updated 3 months ago