ekg / smithwatermanLinks
smith-waterman-gotoh alignment algorithm
☆17Updated 7 years ago
Alternatives and similar repositories for smithwaterman
Users that are interested in smithwaterman are comparing it to the libraries listed below
Sorting:
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 4 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆59Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 10 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 4 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 5 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- Reduced Alphabet based Protein similarity Search☆41Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆34Updated last month
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- ☆14Updated 6 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆28Updated last month