smith-waterman-gotoh alignment algorithm
☆18Sep 1, 2017Updated 9 years ago
Alternatives and similar repositories for smithwaterman
Users that are interested in smithwaterman are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Oct 2, 2026Updated last month
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 14 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year
- libmaus☆12Apr 16, 2015Updated 11 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 6 months ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆18Nov 1, 2021Updated 5 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆19Sep 4, 2024Updated 2 years ago
- ☆323Jan 15, 2026Updated 9 months ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- Zero-inflated mixture model for single-cell data.☆14Feb 16, 2016Updated 10 years ago
- Implementation of an algorithm to find all the elementary circuits in a directed (multi)graph.☆10Aug 16, 2013Updated 13 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 10 years ago
- ☆11Sep 11, 2024Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- ☆10Oct 16, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Code for DNA plasmid editing.☆44Aug 17, 2018Updated 8 years ago
- Generic k-means implementation written in Rust☆16Feb 5, 2020Updated 6 years ago
- This repository is retired software☆14Oct 29, 2015Updated 11 years ago
- ☆17Aug 25, 2025Updated last year
- LevelDB storage backend for Dat☆19Dec 7, 2014Updated 11 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- ☆25May 21, 2021Updated 5 years ago
- ☆55Jun 24, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 3 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- ☆14Feb 7, 2020Updated 6 years ago
- Parallel implementation of Self-Organizing Map (SOM) algorithm with MapReduce-MPI☆15Nov 4, 2011Updated 14 years ago
- cython wrapper to fastahack☆12Aug 27, 2013Updated 13 years ago