ekg / smithwatermanLinks
smith-waterman-gotoh alignment algorithm
☆17Updated 7 years ago
Alternatives and similar repositories for smithwaterman
Users that are interested in smithwaterman are comparing it to the libraries listed below
Sorting:
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated last year
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 4 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 5 years ago
- Substring index for paths in a graph☆60Updated 3 months ago
- simuG: a general-purpose genome simulator☆96Updated last month
- BWT-based index for graphs☆71Updated 5 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- BESST - scaffolder for genomic assemblies☆58Updated 2 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ☆12Updated 6 years ago
- ☆29Updated last year
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆74Updated last year
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- tools for error correction and working with long read data☆44Updated 10 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 8 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago