ekg / smithwatermanLinks
smith-waterman-gotoh alignment algorithm
☆17Updated 8 years ago
Alternatives and similar repositories for smithwaterman
Users that are interested in smithwaterman are comparing it to the libraries listed below
Sorting:
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆75Updated last year
- reference-guided aligner for next-generation sequencing technologies☆57Updated 9 years ago
- BWT-based index for graphs☆73Updated 10 months ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- Substring index for paths in a graph☆60Updated last week
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 9 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆63Updated 5 years ago
- Fast and memory-efficient sequencing error corrector☆94Updated 3 weeks ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 4 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Updated 3 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- ☆30Updated last year
- ☆12Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 5 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆39Updated 9 months ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 12 years ago