uym2 / MinVar-RootingLinks
Linear-time rooting of phylogenetic trees
☆16Updated 2 years ago
Alternatives and similar repositories for MinVar-Rooting
Users that are interested in MinVar-Rooting are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- ☆72Updated 4 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆34Updated last month
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Implementation of the TreeShrink problem☆48Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Bifrost graph gene caller.☆95Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- A program for detection of tRNA genes☆71Updated 2 years ago
- ☆78Updated this week
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆75Updated 2 weeks ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- ☆24Updated 6 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago