uym2 / MinVar-RootingLinks
Linear-time rooting of phylogenetic trees
☆16Updated 2 years ago
Alternatives and similar repositories for MinVar-Rooting
Users that are interested in MinVar-Rooting are comparing it to the libraries listed below
Sorting:
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆64Updated 2 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- IS mapping software☆56Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆15Updated 3 months ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆72Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- A toolbox for comparative genomics.☆104Updated 4 years ago
- ☆72Updated 2 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 8 months ago
- ☆84Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆75Updated this week
- ☆36Updated 3 years ago