Linear-time rooting of phylogenetic trees
☆18Jun 12, 2023Updated 3 years ago
Alternatives and similar repositories for MinVar-Rooting
Users that are interested in MinVar-Rooting are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆13Jun 23, 2025Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- Web interface for Kaptive, the tool for in silico serotyping☆11Aug 7, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene tree - species tree reconciliation from gene tree distributions☆44Oct 15, 2026Updated 2 weeks ago
- Implementation of the TreeShrink problem☆61May 28, 2026Updated 5 months ago
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 7 months ago
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆14Jun 6, 2024Updated 2 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated last year
- ☆10May 27, 2025Updated last year
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- phylobayes mpi☆28Jul 30, 2026Updated 3 months ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Node.js, mongo DB blog template☆10Jul 18, 2023Updated 3 years ago
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Feb 25, 2023Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PAGAN2 multiple sequence aligner☆12Sep 4, 2026Updated last month
- Some NGS workflow created by snakemake☆14Jun 30, 2026Updated 4 months ago
- Repository that host code to show my genshin stats. Claims daily reward and active primo codes.☆13Sep 23, 2022Updated 4 years ago
- Python computational experiment management☆12Jul 21, 2022Updated 4 years ago
- ☆14Jul 13, 2020Updated 6 years ago
- Captures several data from the PC version of Genshin Impact GUI through screen scraping☆13Nov 3, 2020Updated 5 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year