Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.
☆15Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for spliceai-pytorch
Users that are interested in spliceai-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆16May 22, 2025Updated 10 months ago
- Superfast betabinomial fit implemented in Cython☆15Oct 21, 2025Updated 5 months ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- A Docker image for the CLIFF geolocation software.☆10Jun 12, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Meta-analysis of drug target evidence in single-cell data☆16Oct 22, 2024Updated last year
- Genomic signature interpretation tool for DNA double-strand break repair mechanism☆11Oct 8, 2025Updated 5 months ago
- TMARKER is a software for cancer cell nucleus detection, segmentation, counting, and classification.☆14Feb 22, 2017Updated 9 years ago
- Convert raw AAIndex data into Python-friendly, ready-to-use dataframes☆11Mar 19, 2020Updated 6 years ago
- ☆18Nov 18, 2025Updated 4 months ago
- A collection of stemmers in Clojure☆21Jan 17, 2023Updated 3 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Captcha image generator for Zkaptcha☆13Mar 30, 2023Updated 2 years ago
- FlameGraphs for Go☆19Sep 23, 2014Updated 11 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆10Nov 30, 2024Updated last year
- 🖥💬 A GPT-3 powered tool for (dangerously) asking your computer questions about itself☆13Dec 22, 2022Updated 3 years ago
- A collection of Jupyter notebooks.☆11Oct 31, 2017Updated 8 years ago
- AutoML Two-Sample Test☆19Aug 3, 2022Updated 3 years ago
- Code linked to blog posts on data science and machine learning topics.☆11Aug 12, 2022Updated 3 years ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆35May 10, 2016Updated 9 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- ☆22Jun 12, 2024Updated last year
- ☆11Sep 24, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Primary RNA sequence model☆43May 20, 2024Updated last year
- Demos for the paper Generalized Variational Inference (Knoblauch, Jewson & Damoulas, 2019)☆20Apr 4, 2019Updated 6 years ago
- A "routes as data" HTTP routing library for Ring and Clojure.☆17Apr 28, 2015Updated 10 years ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Updated this week
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 4 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- ☆22Dec 7, 2023Updated 2 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ☆12Jan 12, 2021Updated 5 years ago
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 3 years ago
- A Java SDK for TCIA☆11Jun 21, 2022Updated 3 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Zenhub On-Premise brings all the benefits of Zenhub.com to your own private cloud.☆14Updated this week
- This is the core functions needed by the `tsmp` package. The low level and carefully checked mathematical functions are here. These are i…☆12Dec 16, 2025Updated 3 months ago