nadavbra / ukbb_parserLinks
A Python module for loading phenotypic and genetic data from the UK Biobank.
☆36Updated 4 years ago
Alternatives and similar repositories for ukbb_parser
Users that are interested in ukbb_parser are comparing it to the libraries listed below
Sorting:
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆54Updated 2 years ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆117Updated 2 months ago
- An R package to manipulate and explore UK Biobank data☆107Updated 2 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆40Updated 3 weeks ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Updated 3 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆22Updated 6 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆149Updated last month
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆26Updated 4 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆195Updated last year
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆41Updated 4 years ago
- ☆90Updated last year
- ☆33Updated 7 months ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆37Updated 2 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆29Updated last year
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 5 years ago
- ☆47Updated 7 months ago
- ☆31Updated 11 months ago
- ☆46Updated last year
- Brain Cell Type Specific Gene Expression Analysis☆16Updated last year
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆19Updated last year
- ☆20Updated last year
- UKB RAP Notebooks Genomics contains a collection of examples of how to use UK Biobank Genomics data on the Research Analysis Platform (RA…☆22Updated 11 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆14Updated 2 years ago
- R package for UK Biobank data wrangling.☆21Updated last year
- ☆47Updated last month
- A package to estimate biological organ age using SomaScan plasma proteomics data☆59Updated last year
- PheTK Official Repository☆21Updated 2 weeks ago
- The PheWAS R package☆143Updated 5 months ago
- Bayesian multi-response Mendelian randomisation☆20Updated 5 months ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆62Updated 2 years ago