A Python module for loading phenotypic and genetic data from the UK Biobank.
☆41Nov 3, 2025Updated 7 months ago
Alternatives and similar repositories for ukbb_parser
Users that are interested in ukbb_parser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆63Mar 31, 2023Updated 3 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆28Oct 12, 2018Updated 7 years ago
- An ensemble of functions for use analysing the UKBB records on DNA Nexus☆15Apr 22, 2026Updated 2 months ago
- Python for UK Biobank data analysis☆10Dec 3, 2024Updated last year
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆33Feb 19, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Apr 7, 2022Updated 4 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆71Jul 25, 2023Updated 2 years ago
- Prepare UK Biobank Electronic Health Record data for research☆32Aug 31, 2022Updated 3 years ago
- Helper functions for UK Biobank data☆13Dec 6, 2021Updated 4 years ago
- UKB Weekend Warrior MVPA Analysis☆13Apr 28, 2025Updated last year
- Prepare electronic medical record data from the UK Biobank for time-to-event analyses☆16Sep 10, 2025Updated 9 months ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆44Jul 12, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆36Apr 27, 2026Updated 2 months ago
- ☆23Jan 4, 2024Updated 2 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆65Apr 13, 2026Updated 2 months ago
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 5 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆21Feb 26, 2021Updated 5 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆166Oct 22, 2025Updated 8 months ago
- Code for the paper 'Identifying Modifiable Risk Factors and Their Joint Effect on Dementia Prevention'☆16Mar 9, 2023Updated 3 years ago
- An R package to manipulate and explore UK Biobank data☆110Feb 22, 2023Updated 3 years ago
- Download UKB bulk data☆12Jul 27, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A data visualization curriculum of interactive notebooks.☆14Nov 21, 2021Updated 4 years ago
- ☆13Nov 30, 2018Updated 7 years ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆25Jun 20, 2024Updated 2 years ago
- ☆40Jan 24, 2018Updated 8 years ago
- Create Regional Association Plots☆13May 27, 2026Updated last month
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆13May 11, 2020Updated 6 years ago
- Extracting meaningful health information from large accelerometer datasets☆247Nov 10, 2025Updated 7 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆19Dec 22, 2022Updated 3 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆385Jun 7, 2023Updated 3 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆259Jul 30, 2024Updated last year
- This code relates to the project titled "Depression and risk of gastrointestinal disorders: a comprehensive two-sample Mendelian randomiz…☆20Feb 1, 2023Updated 3 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆20Mar 30, 2021Updated 5 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆170Feb 19, 2026Updated 4 months ago
- Late AMD progression classification using fundus images and genotypes☆23Aug 17, 2023Updated 2 years ago