nadavbra / ukbb_parser
A Python module for loading phenotypic and genetic data from the UK Biobank.
☆34Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for ukbb_parser
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆44Updated last year
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆56Updated 3 weeks ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 3 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆27Updated this week
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- ☆57Updated 9 months ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆29Updated last year
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆131Updated 3 months ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- ☆27Updated 3 weeks ago
- Prepare UK Biobank Electronic Health Record data for research☆25Updated 2 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆23Updated last year
- An R package to manipulate and explore UK Biobank data☆96Updated last year
- Pipeline for processing UK biobank data☆12Updated 4 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆16Updated 6 years ago
- ☆23Updated last month
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆136Updated 5 months ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆18Updated 3 years ago
- R package for UK Biobank data wrangling.☆16Updated 6 months ago
- ☆35Updated last year
- Code to reproduce the multi-omics benchmark study☆7Updated 2 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆56Updated last year
- Python for UK Biobank data analysis. Author: saphir746☆15Updated 5 years ago
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆11Updated 4 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆11Updated last year
- ☆32Updated 3 months ago