UK-Biobank / UKB-RAP-Notebooks-GenomicsLinks
UKB RAP Notebooks Genomics contains a collection of examples of how to use UK Biobank Genomics data on the Research Analysis Platform (RAP).
☆33Updated last year
Alternatives and similar repositories for UKB-RAP-Notebooks-Genomics
Users that are interested in UKB-RAP-Notebooks-Genomics are comparing it to the libraries listed below
Sorting:
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆94Updated 2 years ago
- Meta-analysis of genomewide association scans☆63Updated last year
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆150Updated 2 weeks ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆76Updated 3 weeks ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆53Updated 2 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆157Updated 3 months ago
- Reading, querying and writing GWAS summary data in VCF format☆94Updated 2 months ago
- ☆33Updated last year
- ☆51Updated 6 months ago
- R interface to the IEU GWAS database API☆105Updated last month
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 5 years ago
- Data objects for various sets of instruments☆47Updated 5 years ago
- Causal Mixture Model for GWAS summary statistics☆94Updated last month
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Updated last week
- Repo for the R package coloc☆188Updated 2 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆59Updated 4 years ago
- Easily download publicly available GWAS summary statistics.☆78Updated 2 years ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆43Updated 10 months ago
- An R package for Mendelian Randomization☆39Updated last year
- Linking GWAS data to analytical tools in R☆151Updated 3 years ago
- R package for CAUSE☆56Updated 2 years ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆94Updated last month
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Updated 4 years ago
- MetaXcan software and manuscript☆186Updated 7 months ago
- LDlinkR☆63Updated last year
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆41Updated 4 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Updated 3 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆19Updated 3 years ago
- ☆44Updated 8 months ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Updated 2 years ago