kenhanscombe / ukbtools
An R package to manipulate and explore UK Biobank data
☆102Updated 2 years ago
Alternatives and similar repositories for ukbtools:
Users that are interested in ukbtools are comparing it to the libraries listed below
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆146Updated 10 months ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆34Updated 4 months ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆26Updated last year
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- The PheWAS R package☆139Updated last month
- ☆31Updated 5 months ago
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆52Updated last week
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆83Updated last month
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆20Updated 6 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆158Updated 8 months ago
- R package for CAUSE☆54Updated last year
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆50Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- ☆61Updated 9 months ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆86Updated last year
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆13Updated 2 years ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆78Updated 3 months ago
- Non-linear Mendelian randomization☆54Updated last year
- Bayesian multi-response Mendelian randomisation☆16Updated 2 years ago
- R interface to the IEU GWAS database API☆91Updated 2 weeks ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- Causal Mixture Model for GWAS summary statistics☆71Updated last year
- Data objects for various sets of instruments☆44Updated 4 years ago
- corrplot of LDSC genetic correlation results☆50Updated 3 years ago
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆58Updated 2 months ago
- ☆27Updated 2 months ago
- R package for UK Biobank data wrangling.☆18Updated 11 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆47Updated 4 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆56Updated last year