Alternatives and similar repositories for biomed-multi-omic

Users that are interested in biomed-multi-omic are comparing it to the libraries listed below

• BiomedSciAI / gene-benchmark

  View on GitHub
  Benchmark gene representations from different model families
  ☆14May 29, 2025Updated 8 months ago
• BiomedSciAI / biomed-multi-view

  View on GitHub
  This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines…
  ☆40Jun 4, 2025Updated 8 months ago
• BiomedSciAI / fuse-drug

  View on GitHub
  FuseMedML based molecular biochemistry library for drug discovery/repurposing
  ☆24Dec 6, 2025Updated 2 months ago
• HLTCHKUST / snp2vec

  View on GitHub
  Code and dataset for SNP2Vec paper
  ☆21May 12, 2023Updated 2 years ago
• BiomedSciAI / biomed-multi-alignment

  View on GitHub
  We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple …
  ☆40Oct 29, 2025Updated 3 months ago
• ypeleg / MinimalIsAllYouNeed

  View on GitHub
  <In Development> Transformers for Keras that support sklearn's .fit .predict .
  ☆30Jun 23, 2020Updated 5 years ago
• BiomedSciAI / fuse-med-ml

  View on GitHub
  A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
  ☆153Jan 18, 2026Updated 3 weeks ago
• broadinstitute / trexplorer-catalog

  View on GitHub
  Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]
  ☆17Jan 30, 2026Updated 2 weeks ago
• agbooth / protein_purification

  View on GitHub
  Protein Purification
  ☆11Dec 7, 2016Updated 9 years ago
• yotamfr / prot2vec

  View on GitHub
  protein embedding project
  ☆12May 3, 2018Updated 7 years ago
• JanaSperschneider / NuclearPhaser

  View on GitHub
  Phasing of dikaryotic fungal genome assemblies
  ☆13Mar 1, 2023Updated 2 years ago
• Genentech / ARGMINN

  View on GitHub
  ☆11Oct 10, 2024Updated last year
• nadavbra / ukbb_parser

  View on GitHub
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆39Nov 3, 2025Updated 3 months ago
• opentargets / stopReasons

  View on GitHub
  Analysis on stop reasons
  ☆10Jun 17, 2024Updated last year
• Maize-Genetics-and-Genomics-Database / PanEffect

  View on GitHub
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Jan 30, 2024Updated 2 years ago
• akikuno / cstag

  View on GitHub
  Python module to manipulate and visualize minimap2's cs tag
  ☆11Jul 28, 2024Updated last year
• GlycanML / GlycanML

  View on GitHub
  ☆13Jun 5, 2024Updated last year
• HUPO-PSI / psi-mod-CV

  View on GitHub
  PSI-MOD ontology for modified and unmodified amino acid residues
  ☆14Jan 8, 2026Updated last month
• ohdongha / OrthNet

  View on GitHub
  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…
  ☆10Jun 9, 2022Updated 3 years ago
• jiagengjie / Estimating-Genetic-Parameters

  View on GitHub
  ☆10Jun 29, 2021Updated 4 years ago
• mmdarmofal / GDD_ENS

  View on GitHub
  Tumor type classifier using cancer genomic panel sequencing data
  ☆12Mar 12, 2024Updated last year
• bgbg / datascience_dataviz_workshop

  View on GitHub
  Data visualization workshop
  ☆11May 12, 2020Updated 5 years ago
• DataHackIL / DataLearn-ML-Intro-2019

  View on GitHub
  The repository of the hands-on introduction to machine learning workshop of the DataLearn 2019 track at DataHack 2019.
  ☆10Sep 1, 2019Updated 6 years ago
• olaadapo / scrape-news-articles

  View on GitHub
  scraping news articles from Quartz
  ☆10Feb 9, 2021Updated 5 years ago
• junhaiqi / centroAnno

  View on GitHub
  ☆16Jan 14, 2026Updated last month
• DivyaratanPopli / Kinship_Inference

  View on GitHub
  This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
  ☆14Aug 6, 2024Updated last year
• ctb / 2025-ncbi-rest-api

  View on GitHub
  Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t
  ☆12Feb 23, 2025Updated 11 months ago
• mkpython3 / Mutation-Simulator

  View on GitHub
  A tool for simulating random mutations in any genome
  ☆43Feb 7, 2024Updated 2 years ago
• h3abionet / H3ABionet-SOPs

  View on GitHub
  Standard operating procedures for H3ABionet data processing and analyses
  ☆11Aug 30, 2021Updated 4 years ago
• lindenb / rbcf

  View on GitHub
  R Bindings for htslib/bcf
  ☆10Oct 4, 2023Updated 2 years ago
• Amelie-Schreiber / protein_mutation_scoring

  View on GitHub
  Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2
  ☆11Dec 10, 2023Updated 2 years ago
• omicsEye / deepbreaks

  View on GitHub
  deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…
  ☆12Oct 22, 2025Updated 3 months ago
• upura / booking-challenge-2021

  View on GitHub
  Repository for Booking.com Data Challenge 6th Place Solution
  ☆10Feb 17, 2021Updated 4 years ago
• MacoskoLab / cerebellum-atlas-analysis

  View on GitHub
  Code and scripts used in analysis of snRNAseq cerebellar cortex atlas
  ☆12Oct 11, 2021Updated 4 years ago
• dhimmel / mesh

  View on GitHub
  User-friendly extensions to MeSH
  ☆11Feb 4, 2016Updated 10 years ago
• sagagugit / ProBASS

  View on GitHub
  ☆13Dec 5, 2024Updated last year
• pangenome / genotypify

  View on GitHub
  Genotyping lots of samples with big pangenomes
  ☆11Oct 30, 2025Updated 3 months ago
• evanbiederstedt / edlibR

  View on GitHub
  R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).
  ☆11Jul 20, 2025Updated 6 months ago
• lsncibb / SummaryAUC

  View on GitHub
  Calculate AUC based on GWAS summary statistics only
  ☆10Jun 29, 2018Updated 7 years ago