Alternatives and similar repositories for biomed-multi-omic

Users that are interested in biomed-multi-omic are comparing it to the libraries listed below

• m42-health / biofm-eval
  Library to extract embeddings for DNA sequences using BioFM genomics foundation model
  ☆16Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• HLTCHKUST / snp2vec
  Code and dataset for SNP2Vec paper
  ☆21Updated 2 years ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 11 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆36Updated 7 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 5 months ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆24Updated 3 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆42Updated 4 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆82Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 3 months ago
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆22Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• mims-harvard / COMPASS
  Generalizable AI predicts immunotherapy outcomes across cancers and treatments
  ☆48Updated last week
• altoslabs / perturbench
  ☆56Updated last month
• kundajelab / DART-Eval
  ☆42Updated 3 months ago
• InfectionMedicineProteomics / BINN
  Generating biologically informed neural networks
  ☆52Updated 9 months ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 4 years ago
• joanaapa / Distillation-DNABERT-Promoter
  Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
  ☆24Updated 3 years ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆16Updated last week
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 5 months ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆47Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 8 months ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆47Updated last year
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆126Updated 2 years ago