ezorita / seeqLinks
DNA/RNA pattern matching algorithm
☆21Updated 3 weeks ago
Alternatives and similar repositories for seeq
Users that are interested in seeq are comparing it to the libraries listed below
Sorting:
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆31Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- A Python library for reading and writing PacBio® data files☆40Updated 6 months ago
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆19Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Updated 3 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- De novo adapter prediction algorithm for small RNA sequencing data☆23Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆31Updated 7 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago