ngs-docs / ngs-scripts
scripts!
☆11Updated 10 years ago
Related projects: ⓘ
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 10 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A talk on Makesfiles in bioinformatics☆26Updated 11 years ago
- Library of snakemake rules.☆12Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆18Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Very very long reads, indeed☆13Updated 7 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated last year
- reference free variant assembly☆32Updated last year
- What's The Function of these genes?☆23Updated 7 years ago
- ☆37Updated 4 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Updated 5 years ago
- A Teaching Engine for Genomics☆11Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆24Updated 4 years ago
- cache packages permanently☆12Updated 2 months ago
- NExt generation Analysis Toolbox☆14Updated 8 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Perform microbiome-wide association studies with a variety of models☆16Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆21Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Set of tools for viral metagenomics.☆13Updated 9 months ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago