Alternatives and similar repositories for MQF:

Users that are interested in MQF are comparing it to the libraries listed below

• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last month
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 10 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• medvedevgroup / UST
  ☆25Updated 4 years ago
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆13Updated 6 years ago
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 4 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 5 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• Kingsford-Group / miniception
  ☆13Updated 5 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• luizirber / ukhs
  Universal K-mer Hitting Set library in Rust
  ☆10Updated 4 years ago
• seqan / needle
  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
  ☆14Updated this week
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆20Updated 3 months ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 3 months ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 7 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated last month
• nh13 / fqme
  ☆22Updated 5 months ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• lrobidou / findere
  ☆17Updated 5 months ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 6 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated 2 weeks ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 4 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago