dbeanm / UMLS-Neo4j
Load all concepts and relationships from UMLS into a Neo4j database
☆11Updated 4 years ago
Alternatives and similar repositories for UMLS-Neo4j:
Users that are interested in UMLS-Neo4j are comparing it to the libraries listed below
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated 11 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 9 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated last week
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- ☆65Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- ☆53Updated 4 years ago
- ☆97Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated last month
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- A near real-time named-entity recognizer☆59Updated 9 months ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated 11 months ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- This repository contains a corpus of medical case reports with entity and relation annotations in BioC format.☆17Updated 5 years ago
- A convolutional neural network model for relation extraction.☆13Updated last year
- ☆26Updated 4 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆43Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago