adahealth / medical_case_report_corpus
This repository contains a corpus of medical case reports with entity and relation annotations in BioC format.
☆17Updated 5 years ago
Alternatives and similar repositories for medical_case_report_corpus:
Users that are interested in medical_case_report_corpus are comparing it to the libraries listed below
- BioELECTRA☆51Updated 3 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆18Updated 11 months ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 2 weeks ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 10 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 9 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆55Updated last month
- ☆26Updated 4 years ago
- Weakly supervised medical named entity classification☆72Updated 2 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 4 months ago
- ☆13Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- ☆97Updated 3 years ago
- Transformers for Clinical NLP☆23Updated last month
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆59Updated 2 years ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆61Updated last year
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆17Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆12Updated 2 years ago
- ☆25Updated last year
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- A basic AMIA (American Medical Informatics Association) style compliant LaTeX paper skeleton☆19Updated 9 years ago
- Dataset for the NLPMC @ NAACL 2021 Paper: Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?☆14Updated 3 years ago