adahealth / medical_case_report_corpus
This repository contains a corpus of medical case reports with entity and relation annotations in BioC format.
☆17Updated 5 years ago
Alternatives and similar repositories for medical_case_report_corpus:
Users that are interested in medical_case_report_corpus are comparing it to the libraries listed below
- A Serverless Text Annotation Tool for Corpus Development☆53Updated last month
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆96Updated 2 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆17Updated 9 months ago
- Corpus of Online Medical EnTities: the cometA corpus☆48Updated 8 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆17Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 7 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆40Updated 4 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 3 years ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- ☆38Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆76Updated this week
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆24Updated last year
- ☆65Updated 2 years ago
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆11Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆115Updated last year
- BioELECTRA☆51Updated 3 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆58Updated 2 years ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- ☆25Updated 4 years ago