Tian312 / PICO_ParserLinks
A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
☆46Updated 4 years ago
Alternatives and similar repositories for PICO_Parser
Users that are interested in PICO_Parser are comparing it to the libraries listed below
Sorting:
- ☆91Updated 6 years ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- ☆73Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- ☆99Updated 3 years ago
- ☆153Updated last year
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆170Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆152Updated last year
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 3 months ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Python wraper for MetaMap☆174Updated 5 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- PubMed 200k RCT dataset: a large dataset for sequential sentence classification.☆198Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆52Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆198Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆129Updated 2 years ago
- Code for the emrQA question answering dataset☆151Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- SciFive: a text-text transformer model for biomedical literature☆97Updated last year
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- A near real-time named-entity recognizer☆61Updated last month
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago