Tian312 / PICO_Parser
A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
☆45Updated 4 years ago
Alternatives and similar repositories for PICO_Parser:
Users that are interested in PICO_Parser are comparing it to the libraries listed below
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- ☆90Updated 5 years ago
- ☆53Updated 4 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- ☆97Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 9 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆322Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- ☆16Updated 2 years ago
- Transformers for Clinical NLP☆23Updated last month
- ☆148Updated last year
- A near real-time named-entity recognizer☆59Updated 9 months ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated last month
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆28Updated 3 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆59Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Repository for student projects within biomedical text mining from Lund University☆52Updated last year
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- Weakly supervised medical named entity classification☆72Updated 2 years ago
- ☆26Updated 4 years ago