p2 / ClinicalTrialsNLPLinks
Classes for ClinicalTrials.gov related projects
☆47Updated 6 years ago
Alternatives and similar repositories for ClinicalTrialsNLP
Users that are interested in ClinicalTrialsNLP are comparing it to the libraries listed below
Sorting:
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 6 years ago
- ☆98Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- Public release of the DeepPhe analytic software☆30Updated last month
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 7 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- A near real-time named-entity recognizer☆62Updated 5 months ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated 2 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆233Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated last year
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 3 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- ☆55Updated 5 years ago
- Health NLP Examples☆89Updated 7 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Reach Biomedical Information Extraction☆98Updated last year
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆21Updated 6 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated 2 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 3 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Miscellaneous tools for clinical ML☆29Updated 8 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- Clinical Pipeline Engine using Apache cTAKES☆24Updated 10 years ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year