davidvi / pypanda
Python implementation of PANDA (Passing Attributes between Networks for Data Assimilation)
☆39Updated 6 years ago
Alternatives and similar repositories for pypanda:
Users that are interested in pypanda are comparing it to the libraries listed below
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding☆17Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆26Updated this week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 5 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆62Updated 3 years ago
- topological data analysis of population-scale microbiomes☆32Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 6 months ago
- TF MOtif Discovery from Importance SCOres☆135Updated last year
- ☆25Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆22Updated 2 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago