Alternatives and similar repositories for CYCLOPS

Users that are interested in CYCLOPS are comparing it to the libraries listed below

• tidyomics / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆176Updated 2 months ago
• jdblischak / singleCellSeq
  Batch effects and the effective design of single-cell gene expression studies
  ☆104Updated 6 years ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆145Updated 9 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• stephenslab / susieR
  R package for "sum of single effects" regression.
  ☆240Updated this week
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆256Updated 3 weeks ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆162Updated 3 weeks ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated last week
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆95Updated last year
• mikelove / bioc-refcard
  Bioconductor cheat sheet
  ☆190Updated last year
• hawn-lab / workshops_UW_Seattle
  ☆26Updated 4 years ago
• kasperdanielhansen / genbioconductor
  Materials for Genomics Data Science: Introduction to Bioconductor
  ☆97Updated last year
• mskcc / RNAseqDB
  ☆144Updated 7 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆158Updated last month
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆60Updated 5 years ago
• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆196Updated last month
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆111Updated 5 years ago
• bioFAM / MOFA2
  Multi-Omics Factor Analysis
  ☆376Updated this week
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆168Updated 7 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last week
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆262Updated last week
• StoreyLab / qvalue
  R package to estimate q-values and false discovery rate quantities.
  ☆120Updated 2 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆217Updated last month
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆100Updated 9 years ago
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆171Updated 3 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 weeks ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆450Updated 2 months ago
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆258Updated 5 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated 3 weeks ago