Alternatives and similar repositories for EARRINGS:

Users that are interested in EARRINGS are comparing it to the libraries listed below

• KHP-Informatics / DNAscanv2
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14Updated 8 months ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated last month
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆11Updated 2 months ago
• matsengrp / phippery
  ☆14Updated 2 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated last month
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated 6 months ago
• yuansliu / minirmd
  ☆12Updated last year
• xia-lab / Seq2Fun
  ☆16Updated 9 months ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated 2 months ago
• zstephens / telogator2
  A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.
  ☆12Updated this week
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 9 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆15Updated last month
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 5 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 2 months ago
• fmfi-compbio / warpstr
  Determining tandem repeat lengths using raw nanopore signals.
  ☆13Updated last year
• ktan8 / nanopore_telomere_basecall
  ☆14Updated last year
• kantorlab / hivmmer
  Alignment and variant-calling pipeline for Illumina HIV sequences.
  ☆11Updated 4 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆14Updated 6 months ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆16Updated 4 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆21Updated 3 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• ay-lab / ExTraMapper
  ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…
  ☆10Updated 2 years ago
• soedinglab / tejaas
  Tejaas - a tool for discovering trans-eQTLs
  ☆11Updated 2 years ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last year
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated 5 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 4 months ago
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆13Updated 4 years ago