Alternatives and similar repositories for AI-FFPE

Users that are interested in AI-FFPE are comparing it to the libraries listed below

• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• kevindehaan / stain-transformation
  ☆40Updated 3 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆56Updated 2 years ago
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆31Updated 3 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆100Updated 4 months ago
• Paige-AI / paige-ml-sdk
  This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…
  ☆38Updated 3 weeks ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆47Updated 3 months ago
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆54Updated last year
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆19Updated 10 months ago
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆38Updated 2 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆78Updated last year
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆101Updated 6 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 11 months ago
• AGFoersch / MultiStainDeepLearning
  Code from Foersch et al. (Under Construction / Development)
  ☆36Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆157Updated 5 months ago
• taliq / TEA-graph
  First commit
  ☆62Updated 2 years ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆52Updated 5 months ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆69Updated 2 years ago
• impromptuRong / hd_wsi
  ☆33Updated 2 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆67Updated 2 years ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆128Updated 4 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆102Updated 6 months ago
• AI4SCR / VirtualMultiplexer
  A generative toolkit to translate H&E images to multiplexed IHC
  ☆40Updated 5 months ago
• MWod / ANHIR_MW
  Software used by the AGH team during the ANHIR challenge.
  ☆27Updated 4 years ago
• markowetzlab / pathml-tutorial
  A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…
  ☆24Updated 3 years ago
• KatherLab / preProcessing
  ☆45Updated 2 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆79Updated this week