Alternatives and similar repositories for AI-FFPE:

Users that are interested in AI-FFPE are comparing it to the libraries listed below

• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆67Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆68Updated last year
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 2 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆52Updated 2 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆59Updated this week
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated last year
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆92Updated 3 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆97Updated 3 weeks ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆69Updated this week
• markowetzlab / pathml-tutorial
  A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…
  ☆22Updated 3 years ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆51Updated 3 years ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆95Updated 3 weeks ago
• Paige-AI / paige-ml-sdk
  This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…
  ☆36Updated 6 months ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆36Updated 4 years ago
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆20Updated 7 months ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆67Updated last month
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆129Updated 3 years ago
• KatherLab / preProcessing
  ☆43Updated last year
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆54Updated 2 weeks ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆30Updated 2 years ago
• taliq / TEA-graph
  First commit
  ☆60Updated 2 years ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆145Updated 2 months ago
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆75Updated 4 years ago
• AIRMEC / im4MEC
  Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…
  ☆38Updated last year
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆51Updated 2 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆46Updated 9 months ago
• AI4SCR / VirtualMultiplexer
  A generative toolkit to translate H&E images to multiplexed IHC
  ☆31Updated 2 months ago