tand826 / wsiprocessLinks
Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks
☆25Updated 2 years ago
Alternatives and similar repositories for wsiprocess
Users that are interested in wsiprocess are comparing it to the libraries listed below
Sorting:
- GPU-accelerated stain normalization command line tool☆24Updated 2 years ago
- ☆67Updated last year
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆159Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Updated 4 years ago
- ☆37Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- Histopathology Image Analysis☆92Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆42Updated 2 weeks ago
- DeeperHistReg - Source Code☆83Updated last year
- ☆55Updated 8 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- Stain normalization tools for histological analysis and computational pathology☆166Updated last month
- ☆57Updated 3 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆99Updated last year
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated last year
- ☆102Updated 2 years ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- Python library for processing whole slide images (WSIs) in sdpc format☆63Updated 11 months ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆42Updated 7 months ago
- Solid Tumor Associative Modeling in Pathology☆103Updated 3 weeks ago
- AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images (Medical Image Analysis 2024)☆39Updated 2 years ago
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆34Updated 4 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆27Updated last year
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆59Updated 4 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- Repository for "Gigapixel Whole-Slide Images Classification using Locally Supervised Learning" (MICCAI 2022)☆28Updated 3 years ago