tand826 / wsiprocessLinks
Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks
☆24Updated last year
Alternatives and similar repositories for wsiprocess
Users that are interested in wsiprocess are comparing it to the libraries listed below
Sorting:
- ☆62Updated 9 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆139Updated 3 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆152Updated last year
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- GPU-accelerated stain normalization command line tool☆22Updated last year
- DeeperHistReg - Source Code☆66Updated last year
- Histopathology Slides Preprocessing Pipeline☆40Updated 4 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- Histopathology Image Analysis☆92Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆53Updated 7 months ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆38Updated 2 months ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆61Updated 3 years ago
- ☆56Updated 3 years ago
- Re-stained whole slide image alignment☆33Updated last year
- ☆103Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆30Updated last year
- Stain normalization tools for histological analysis and computational pathology☆147Updated 6 months ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆91Updated 7 months ago
- ☆40Updated 3 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆79Updated last year
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆36Updated 4 years ago
- Python library for processing whole slide images (WSIs) in sdpc format☆52Updated 5 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 3 years ago
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆24Updated last year
- ☆35Updated 2 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆21Updated last month