CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
☆22Oct 20, 2026Updated last week
Alternatives and similar repositories for CytoBrowser
Users that are interested in CytoBrowser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a toolbox for manipulation of digital pathology slides and annotations☆18Aug 11, 2020Updated 6 years ago
- Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course☆10Sep 15, 2023Updated 3 years ago
- Whole Slide Image (WSI) Viewer written in Python (using Qt and OpenSlide)☆10Feb 12, 2020Updated 6 years ago
- A QuPath extension for working with Deep Java Library (https://djl.ai)☆10Apr 23, 2026Updated 6 months ago
- An open-source digital pathology based rapid image annotation tool☆93Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 10 months ago
- ⚡ Open-source software for deep learning-based digital pathology☆146Jun 14, 2024Updated 2 years ago
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Oct 26, 2026Updated last week
- [JBHI'21,CBM'22] Weakly supervised histology whole slide image classification. SICAP-MIL, a dataset of prostate whole slide images.☆11Oct 22, 2024Updated 2 years ago
- Implementation of Semi-Supervised and Semi-Weakly Supervised Teacher/Student Learning approaches☆13Jan 18, 2023Updated 3 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆82Jul 29, 2025Updated last year
- ☆12Dec 6, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code of paper "A Deep Learning based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images"☆11Nov 26, 2021Updated 4 years ago
- Python package for reading DICOM WSI file sets.☆53Updated this week
- The official deployment of the Digital Slide Archive and HistomicsTK.☆140Updated this week
- Intelligent data partitioning using quality control metrics☆18Jun 10, 2025Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Oct 13, 2026Updated 2 weeks ago
- Implementation of various label fusion approaches for medical imaging.☆14May 29, 2025Updated last year
- ☆25May 16, 2023Updated 3 years ago
- iSyntax to raw format converter☆25Nov 26, 2025Updated 11 months ago
- Open source whole slide image preparation and viewing pipeline☆14Mar 16, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for tissue and pen marking segmentation on low-magnification (1.25x) whole slide images.☆19Feb 2, 2026Updated 9 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆23Jan 5, 2023Updated 3 years ago
- An open source online platform for collaborative image labeling of almost everything☆65Updated this week
- PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance learning in Histopathology☆29Jul 14, 2026Updated 3 months ago
- Code for APLA: A Simple Adaptation Method for Vision Transformers☆16Apr 3, 2025Updated last year
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆29Dec 5, 2022Updated 3 years ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- A toolkit for computational pathology analysis including cancer subtyping, survial analysis, report generation, and biomark prediction.☆21Jan 19, 2025Updated last year
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆40Updated this week
- The ImageJ wiki☆30Oct 23, 2026Updated last week
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆14Apr 8, 2023Updated 3 years ago
- Python modules to work with large multiresolution images.☆221Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆275Dec 23, 2023Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆38Oct 8, 2026Updated 3 weeks ago
- Restore a damaged (truncated) mp4, m4v, mov, 3gp video. Provided you have a similar not broken video.☆10May 2, 2026Updated 6 months ago