MIDA-group / CytoBrowserLinks
CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
☆19Updated this week
Alternatives and similar repositories for CytoBrowser
Users that are interested in CytoBrowser are comparing it to the libraries listed below
Sorting:
- SlideRunner is a tool for massive cell annotations in whole slide images☆79Updated last week
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆31Updated 7 months ago
- An open-source digital pathology based rapid image annotation tool☆81Updated last week
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆78Updated 3 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 6 months ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆42Updated 5 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆54Updated last year
- Digital Pathology Whole Slide Image Analysis Toolbox☆49Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆125Updated this week
- A Girder plugin for pathology image annotations and analysis.☆73Updated this week
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆133Updated last year
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 3 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆18Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆107Updated 2 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆27Updated 2 weeks ago
- WSICS☆30Updated 6 years ago
- Preprocessing module for large histological images☆20Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆161Updated last year
- Cytomine Community Edition Legacy☆35Updated 2 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Updated last year
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆32Updated 3 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆124Updated 2 years ago