Alternatives and similar repositories for genenetwork2

Users that are interested in genenetwork2 are comparing it to the libraries listed below

• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• ChristofferFlensburg / superFreq
  Analysis pipeline for cancer sequencing data
  ☆110Updated 3 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• ncbi / magicblast
  ☆37Updated 3 months ago
• lifebit-ai / DeepVariant
  Deep Variant as a Nextflow pipeline
  ☆30Updated 5 years ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆148Updated last month
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 6 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• biosql / biosql
  ☆90Updated 6 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 5 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• Ensembl / ensembl-tools
  Ensembl tools
  ☆35Updated 3 months ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆29Updated last week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆126Updated 3 weeks ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 2 years ago
• ncbi / ngs-tools
  ☆107Updated last month
• CCBR / Pipeliner
  An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
  ☆4Updated 2 years ago
• ryanlayer / gqt
  A genotype query interface.
  ☆136Updated 4 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆53Updated 6 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated last month
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆49Updated last month
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆82Updated this week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 4 months ago
• sebriois / biomart
  Python biomart API
  ☆67Updated 2 years ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago