Alternatives and similar repositories for genenetwork2

Users that are interested in genenetwork2 are comparing it to the libraries listed below

• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• ChristofferFlensburg / superFreq
  Analysis pipeline for cancer sequencing data
  ☆111Updated 6 months ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• lifebit-ai / DeepVariant
  Deep Variant as a Nextflow pipeline
  ☆30Updated 5 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 weeks ago
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆82Updated last month
• ncbi / magicblast
  ☆36Updated 7 months ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated last week
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 5 years ago
• genome / genome
  Core modules used by the GMS
  ☆68Updated last year
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 7 years ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆148Updated last month
• zhanxw / checkVCF
  Sanity check Variant Call Format (VCF) files.
  ☆37Updated 9 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆53Updated 6 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆88Updated 3 weeks ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆65Updated 4 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 6 months ago
• ncbi / ngs-tools
  ☆107Updated last week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆138Updated this week
• data-science-sequencing / data-science-sequencing.github.io
  Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
  ☆67Updated 3 years ago
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆85Updated 6 years ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆101Updated 2 months ago
• genepattern / genepattern-server
  The GenePattern Server web application
  ☆37Updated 2 weeks ago