Genentech / beignet
A standard library for biological research.
☆21Updated 3 weeks ago
Alternatives and similar repositories for beignet:
Users that are interested in beignet are comparing it to the libraries listed below
- A Modular Architecture for Deep Learning Systems☆40Updated this week
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆89Updated this week
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 3 months ago
- Directed evolution of proteins in sequence space with gradients☆83Updated 7 months ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated last week
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆38Updated 2 weeks ago
- Rapid structure-based virtual screening for RNA targets.☆9Updated last month
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆50Updated 7 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆33Updated 3 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated last year
- DrugHIVE: Structure-based drug design with a deep hierarchical generative model☆72Updated 4 months ago
- Massively-Parallel Natural Extension of Reference Frame☆30Updated 2 years ago
- Deep learning for protein science☆33Updated 9 months ago
- ☆34Updated 2 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- ☆18Updated 2 weeks ago
- bioinformatics tools running on modal☆86Updated last week
- ML-guided enzyme engineering☆57Updated 3 weeks ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆74Updated last month
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.☆17Updated 5 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆57Updated 4 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆56Updated 10 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated 3 months ago
- Minimal AlphaFold☆54Updated 7 months ago