Genentech / beignetLinks
A standard library for biological research.
☆29Updated last month
Alternatives and similar repositories for beignet
Users that are interested in beignet are comparing it to the libraries listed below
Sorting:
- Predict the structure of immune receptor proteins☆54Updated 10 months ago
- ☆32Updated 2 weeks ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 7 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆133Updated this week
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆118Updated 4 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Updated last month
- Directed evolution of proteins in sequence space with gradients☆91Updated last year
- This repo contains the results data for Round 2 of EGFR Protein Design Competition.☆18Updated 6 months ago
- Protein design and variant prediction using autoregressive generative models☆112Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 6 months ago
- bioinformatics tools running on modal☆101Updated last week
- Evolutionary velocity with protein language models☆94Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 9 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Simple python interface for the OpenProtein.AI REST API.☆13Updated 3 weeks ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆23Updated last month
- Biological prediction models made simple.☆44Updated last week
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆43Updated last week
- Sandbox for Deep-Learning based Computational Protein Design☆116Updated 3 months ago
- Template-based protein design with Raygun☆73Updated 3 weeks ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆78Updated 4 months ago
- Metrics for our protein design competitions.☆35Updated 11 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Updated 3 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆151Updated 2 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆54Updated 5 months ago
- ☆46Updated 8 months ago
- ☆68Updated 11 months ago
- Reference-free analysis of genetic architecture☆18Updated last year