Alternatives and similar repositories for beignet:

Users that are interested in beignet are comparing it to the libraries listed below

• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆84Updated 8 months ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆33Updated 4 months ago
• rohitsinghlab / CoNCISE
  ☆18Updated last month
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆92Updated this week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆75Updated last month
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆40Updated this week
• hgbrian / biomodals
  bioinformatics tools running on modal
  ☆88Updated last month
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated last year
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆51Updated 8 months ago
• cgoliver / rnamigos2
  Rapid structure-based virtual screening for RNA targets.
  ☆11Updated 2 weeks ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆34Updated last week
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆37Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆65Updated 2 weeks ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆114Updated last month
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆28Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 5 months ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆54Updated 8 months ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆56Updated 5 months ago
• nanand2 / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆34Updated 3 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆31Updated 2 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆56Updated this week
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆28Updated last year
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆34Updated 3 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆38Updated last month