Alternatives and similar repositories for ProcessedAlphafold

Users that are interested in ProcessedAlphafold are comparing it to the libraries listed below

• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 4 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 3 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆54Updated 7 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 3 years ago
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆13Updated 4 years ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆28Updated last year
• mmagnus / awesome-rna-3D-tools
  awesome tools for RNA
  ☆16Updated 2 years ago
• schenc3 / InteractiveROSETTA
  A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites
  ☆29Updated 7 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆53Updated 3 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆40Updated 2 years ago
• BioComputingUP / AlphaFold-disorder
  Predict disorder and disorder binding from AlphaFold structures
  ☆16Updated 9 months ago
• sokrypton / seqmodels
  ☆32Updated last week
• PDB-REDO / libcifpp
  Library containing code to manipulate mmCIF and PDB files
  ☆35Updated last week
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 4 years ago
• carlobaldassi / GaussDCA.jl
  Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
  ☆22Updated 3 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• CMD-Oxford / MichelaNGLo
  A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site
  ☆12Updated 3 years ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• UCL / cathpy
  Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)
  ☆15Updated 11 months ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆57Updated 5 months ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆55Updated 2 months ago
• Faezov / PDBrenum
  ☆30Updated 3 months ago
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 4 years ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated this week
• ncbi / SSDraw
  ☆85Updated last year
• Svvord / visar
  ☆13Updated 5 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆25Updated last year