Alternatives and similar repositories for ProcessedAlphafold:

Users that are interested in ProcessedAlphafold are comparing it to the libraries listed below

• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 3 months ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 3 years ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 2 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆56Updated last week
• DSIMB / MEDUSA
  A Deep Learning based protein flexibility prediction tool.
  ☆9Updated 2 years ago
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆71Updated 2 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆100Updated this week
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 2 years ago
• Faezov / PDBrenum
  ☆28Updated last year
• BioComputingUP / AlphaFold-disorder
  Predict disorder and disorder binding from AlphaFold structures
  ☆16Updated 5 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆34Updated 4 years ago
• biofold / ddgun
  predict stability change upon mutation
  ☆28Updated 10 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆94Updated 9 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆99Updated last year
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆13Updated 3 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 4 months ago
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 3 years ago
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆41Updated 4 years ago
• jurgjn / af-protein-universe
  ☆24Updated last year
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆56Updated 6 months ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆52Updated 3 months ago
• kad-ecoli / BeEM
  Conversion of PDBx/mmCIF files to best effort/minimal PDB files
  ☆17Updated 6 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆31Updated last year