Alternatives and similar repositories for ADOPT

Users that are interested in ADOPT are comparing it to the libraries listed below

• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆49Updated 7 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 5 months ago
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• brineylab / antiref
  AntiRef: reference clusters of human antibody sequences
  ☆12Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆106Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆45Updated 3 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆68Updated last month
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆112Updated this week
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆44Updated last month
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• AbSciBio / igdesign
  ☆41Updated 5 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 6 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 10 months ago
• TattaBio / gLM2
  ☆68Updated 8 months ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆58Updated 3 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆77Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆30Updated last week
• conradry / prtm
  Deep learning for protein science
  ☆35Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆69Updated last week
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• rmrao / evo
  Mono-repo for protein utilities.
  ☆19Updated 3 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated last week
• PDB-REDO / libcifpp
  Library containing code to manipulate mmCIF and PDB files
  ☆35Updated 2 weeks ago
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆58Updated 8 months ago
• ginkgobioworks / ginkgoai-protein-embedding-tutorial
  Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
  ☆19Updated 7 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆126Updated last month
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 3 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year