ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers
☆16Dec 3, 2024Updated last year
Alternatives and similar repositories for ADOPT
Users that are interested in ADOPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble…☆21Apr 17, 2023Updated 3 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆63May 21, 2025Updated 10 months ago
- Derive ΔG for single residues from HDX-MS data☆30Mar 30, 2026Updated 2 weeks ago
- Contributed and additional nodes for maize☆22Feb 18, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆11Dec 15, 2025Updated 4 months ago
- Openfold inference architecture for Amazon EKS☆11Oct 1, 2024Updated last year
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Global analysis platform for fluorescence data☆12Updated this week
- SossMLJ makes it easy to build MLJ machines from user-defined models from the Soss probabilistic programming language☆15Aug 31, 2025Updated 7 months ago
- A minimal PyTorch implementation of BERT (Bidirectional Encoder Representations from Transformers)☆12Mar 20, 2023Updated 3 years ago
- ☆11Mar 28, 2024Updated 2 years ago
- Spark on Docker Swarm example code☆11Nov 27, 2016Updated 9 years ago
- The modern argument parser for c++ tools☆11Mar 31, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Parsing MHC nomenclature in the wild☆20Apr 13, 2026Updated last week
- Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories☆12Mar 28, 2017Updated 9 years ago
- MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precise…☆13Apr 3, 2017Updated 9 years ago
- MCP Firefox browser automation extension for Claude Code - screenshots, clicking, typing, page refresh, and AI-powered web interaction☆36Dec 23, 2025Updated 3 months ago
- Github Pages☆13Apr 29, 2024Updated last year
- Control and Automation of Transmission Electron Microscopes☆13Aug 12, 2022Updated 3 years ago
- Let's you connect your laptop to the iPhone to surf the web and to use ssh (for ssh usage, see iProxySetup preferences).☆25Mar 22, 2012Updated 14 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Feb 8, 2026Updated 2 months ago
- ☆15Nov 21, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆22May 3, 2025Updated 11 months ago
- A program interfacing Segment Anything with cryoSPARC via cryosparc-tools to efficiently identify vesicle-embedded membrane proteins and …☆12Feb 18, 2025Updated last year
- Converts HDF5 files from EIGER detectors to miniCBF format☆10Dec 14, 2018Updated 7 years ago
- ☆16Oct 3, 2023Updated 2 years ago
- Sente Assistant is a free software add-on to improve the experience of using notes in Sente.☆13Dec 25, 2015Updated 10 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Flexibility-conditioned protein structure design☆33Mar 10, 2026Updated last month
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- Two-Dimensional Template Matching implemented in Python☆16Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- Image processing for cryo-electron microscopy in PyTorch☆13Apr 5, 2025Updated last year
- Version 3 of Python mother machine analysis code☆12Jun 22, 2023Updated 2 years ago
- My work on building a deep neural network for fast and accurate protein protein interaction prediction☆11Mar 13, 2024Updated 2 years ago
- ☆12Dec 28, 2025Updated 3 months ago
- Prediction of ligand binding site☆15Feb 3, 2026Updated 2 months ago
- Scripts to make cryo-electron tomography a bit easier☆15Apr 2, 2026Updated 2 weeks ago