jgreener64 / pdb-benchmarksLinks
Benchmarking common tasks on proteins in various languages and packages
☆42Updated 5 years ago
Alternatives and similar repositories for pdb-benchmarks
Users that are interested in pdb-benchmarks are comparing it to the libraries listed below
Sorting:
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Updated last year
- Library containing code to manipulate mmCIF and PDB files☆38Updated this week
- Molecular Query Language☆35Updated last year
- Fast and accurate protein structure prediction☆56Updated 11 months ago
- awesome tools for RNA☆17Updated 3 years ago
- ☆31Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 7 months ago
- Printing text using protein structures☆14Updated 4 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆25Updated 2 years ago
- Python package to manage protein structures and their annotations☆45Updated last year
- Visualize structure data from Biotite with PyMOL☆26Updated 9 months ago
- ☆20Updated 4 years ago
- A framework for rapidly mining structural information from the Protein Data Bank☆53Updated 5 years ago
- A Python platform for Structural Bioinformatics☆58Updated 9 months ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 3 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 4 years ago
- WebGL based molecular viewer☆36Updated last week
- Non-sequential structural alignment program for protein structure☆19Updated last year
- Web cards/apps describing peptides☆30Updated 2 years ago
- Pymol ScrIpt COllection (PSICO)☆64Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 9 months ago
- Python package built around protein structure and dynamics. OpenBabel-inspired objects.☆36Updated 7 months ago
- Fast protein structure searching or your money back☆118Updated 2 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20Updated 6 years ago
- ☆32Updated 3 months ago
- A Rust implementation of the LightDock macromolecular docking software☆29Updated last year
- Control PyMOL sessions via IPython☆61Updated 3 years ago