Alternatives and similar repositories for pdb-benchmarks:

Users that are interested in pdb-benchmarks are comparing it to the libraries listed below

• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆18Updated 3 months ago
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆13Updated 3 years ago
• MolQL / molql
  Molecular Query Language
  ☆30Updated 7 months ago
• mmagnus / awesome-rna-3D-tools
  awesome tools for RNA
  ☆15Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last week
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆41Updated 11 months ago
• normandavey / ProcessedAlphafold
  ☆31Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆50Updated 2 months ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆23Updated last year
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 4 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated 2 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆93Updated last month
• lightdock / lightdock-rust
  A Rust implementation of the LightDock macromolecular docking software
  ☆26Updated 9 months ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆22Updated 3 years ago
• biotite-dev / ammolite
  Visualize structure data from Biotite with PyMOL
  ☆24Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆55Updated last month
• proteinphysiologylab / frustratometeR
  ☆33Updated 3 months ago
• speleo3 / pymol-psico
  Pymol ScrIpt COllection (PSICO)
  ☆58Updated 6 months ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 2 years ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆21Updated 3 months ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆75Updated 2 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆38Updated last year
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• cxhernandez / ipymol
  Control PyMOL sessions via IPython
  ☆57Updated 2 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆50Updated 3 weeks ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆63Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆68Updated 2 weeks ago
• willfinnigan / RetroBioCat
  ☆22Updated last year
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆46Updated 2 weeks ago