jgreener64 / pdb-benchmarksLinks
Benchmarking common tasks on proteins in various languages and packages
☆42Updated 4 years ago
Alternatives and similar repositories for pdb-benchmarks
Users that are interested in pdb-benchmarks are comparing it to the libraries listed below
Sorting:
- Library containing code to manipulate mmCIF and PDB files☆35Updated this week
- localCIDER - sequence analysis tool for disordered protein sequences☆24Updated 2 years ago
- ☆31Updated 4 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year
- Fast and accurate protein structure prediction☆54Updated 8 months ago
- Molecular Query Language☆34Updated last year
- awesome tools for RNA☆16Updated 2 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Printing text using protein structures☆13Updated 4 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆22Updated 3 years ago
- Fast protein structure searching or your money back☆112Updated 5 months ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 4 months ago
- Python package to manage protein structures and their annotations☆44Updated last year
- 🧬 - Data management and modeling framework based on EnzymeML.☆24Updated this week
- Non-sequential structural alignment program for protein structure☆19Updated 10 months ago
- The specification of the MMTF format for biological structures☆44Updated last year
- ☆20Updated 4 years ago
- ☆85Updated 2 weeks ago
- Visualize structure data from Biotite with PyMOL☆26Updated 6 months ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- A Rust implementation of the LightDock macromolecular docking software☆29Updated last year
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- ☆31Updated 3 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆59Updated 5 months ago
- Python package built around protein structure and dynamics. OpenBabel-inspired objects.☆36Updated 3 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- WebGL based molecular viewer☆36Updated last month
- Control PyMOL sessions via IPython☆61Updated 2 years ago