edwardslee / alphabetr
R package for obtaining TCR alpha-beta sequence pairs
β8Updated 8 years ago
Alternatives and similar repositories for alphabetr:
Users that are interested in alphabetr are comparing it to the libraries listed below
- πΆ hlabud: HLA genotype analysis in Rβ16Updated 3 weeks ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyiβ¦β11Updated 5 years ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)β10Updated 2 years ago
- IMSEQ - IMmunogenetic SEQuence Analysisβ15Updated 6 years ago
- Convert TCR gene namesβ12Updated 2 weeks ago
- Summary statistics for repertoiresβ16Updated 2 years ago
- Tutorial for the analysis of scRNA-seq data in Rβ18Updated 6 years ago
- Interactive benchmarking of ranking and assignment methodsβ16Updated 3 weeks ago
- Mean Alterations Using Discrete Expressionβ14Updated last year
- β12Updated 6 years ago
- Analysis tools for PhIP-seq experimentsβ12Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing dataβ10Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)β27Updated 2 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objectsβ13Updated 3 weeks ago
- Scripts for reproducing analyses of large RNA-seq datasetsβ15Updated 5 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoiresβ13Updated 2 years ago
- stageR packageβ12Updated 2 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatioβ¦β13Updated last month
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- integrative pathway analysis with modern PCA methodology and gene selectionβ11Updated last year
- The official Inferelator repository maintained by current or former Bonneau lab membersβ9Updated 7 years ago
- Examples of kallisto + sleuthβ11Updated 7 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.β11Updated last year
- Deconvolution of seed effects from gene effects in large scale RNAi screensβ10Updated 6 years ago
- ChIP-seq peak calling with GC effects adjustmentβ9Updated 6 years ago
- Machine learning use cases for teachingβ13Updated 7 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)β14Updated 8 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β18Updated 3 months ago
- A GenePattern module for running the ssGSEA methodβ13Updated 2 months ago