A deep learning framework for essential gene prediction
☆12Aug 17, 2020Updated 6 years ago
Alternatives and similar repositories for DeepHE
Users that are interested in DeepHE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- Hidden Markov Optimal Transport: learning the sequence of latent cell-states and transitions in transcriptomic time-series.☆10Aug 24, 2025Updated last year
- ☆11May 3, 2022Updated 4 years ago
- Hierarchical Refinement: Optimal Transport to Infinity and Beyond☆20Sep 29, 2025Updated last year
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- A python module to compute contact map of proteins☆11Apr 3, 2026Updated 7 months ago
- MicroPheno Project☆12Oct 21, 2022Updated 4 years ago
- Open source LAB DF3 clone, but with a face insert.☆23Jul 31, 2025Updated last year
- ☆17Nov 11, 2022Updated 3 years ago
- Command Line Interface (CLI) to export METS/ALTO documents to other formats.☆13Apr 25, 2022Updated 4 years ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆14Jun 29, 2026Updated 4 months ago
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Apr 18, 2022Updated 4 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 7 years ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆16Apr 12, 2026Updated 6 months ago
- ☆13Jul 31, 2025Updated last year
- Many algorithms for imbalanced data support binary and multiclass classification only. This approach is made for mulit-label classificati…☆14Jun 2, 2024Updated 2 years ago
- ProtGraph - A Graph-Generator for Proteins☆13Sep 7, 2026Updated last month
- ☆32Oct 14, 2024Updated 2 years ago
- Effect of tokenization on transformers for biological sequence☆24Dec 31, 2025Updated 10 months ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆14Jul 16, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 9 years ago
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- ☆12Aug 16, 2024Updated 2 years ago
- A pipeline for isoseq☆23Jun 8, 2018Updated 8 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Starter code for working with the YouTube-8M dataset.☆16Jun 9, 2017Updated 9 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A repository for the suite of scripts I use to perform automatic cell quantification.☆13Nov 30, 2023Updated 2 years ago
- deepSRAMP is a accurate deep learning model for predicting m6A sites by fusing the sequence and genomic position features☆14Nov 29, 2025Updated 11 months ago
- A collection of TensorFlow tutorials to analyze genomics datasets☆10Feb 2, 2018Updated 8 years ago
- 一个简单的reactor 网络模型实例代码☆12Jun 17, 2019Updated 7 years ago
- Motif Enrichment In Ranked Lists Of Peaks☆10Jun 17, 2021Updated 5 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆96Jul 23, 2024Updated 2 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago