broadinstitute / AwesomeGenomics
Cancer Data Science's go to place for excellent genomics tools and packages
☆29Updated 5 years ago
Alternatives and similar repositories for AwesomeGenomics:
Users that are interested in AwesomeGenomics are comparing it to the libraries listed below
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆43Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆49Updated last year
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 4 months ago
- R package containing useful functions for mutational signature analysis☆81Updated last week
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- Interactive multiscale visualization for structural variation in human genomes☆68Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Clustering motif models to remove redundancy☆40Updated 2 years ago
- Visual exploratory analysis of gene expression data☆43Updated 2 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- ☆68Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week