brennanaba / PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
☆12Updated last year
Alternatives and similar repositories for PLAbDab:
Users that are interested in PLAbDab are comparing it to the libraries listed below
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 4 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 7 months ago
- ☆19Updated 8 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 7 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- ☆24Updated 3 years ago
- Machine learning-driven antibody design☆54Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆14Updated last week
- ☆37Updated 4 months ago
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆25Updated 3 months ago
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- ☆24Updated last week
- An antibody-specific language model focusing on NGL prediction☆25Updated 6 months ago
- ☆49Updated 8 months ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆30Updated 2 months ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- ☆33Updated last month
- ☆68Updated 4 years ago
- Predict the structure of immune receptor proteins☆48Updated 3 months ago
- ☆20Updated last month
- python script that picks suitable targets for siRNA with off-target optimization☆16Updated 3 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- Code for humanization of antibody and nanobody☆35Updated 3 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 3 months ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated this week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆27Updated 2 months ago
- Inference code for Bio-Inspired Antibody Language Model☆23Updated 6 months ago