brennanaba / PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PLAbDab
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆19Updated last week
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- ☆18Updated 5 months ago
- ☆45Updated 5 months ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- Machine learning-driven antibody design☆51Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last week
- Public repository describing training and testing of AntiBERTa.☆53Updated last year
- ☆33Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Tool for modelling the CDRs of antibodies☆45Updated last year
- Tools for annotation, processing and ML for antibody sequences☆20Updated this week
- Predict the structure of immune receptor proteins☆46Updated this week
- An antibody-specific language model focusing on NGL prediction☆20Updated 2 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆20Updated 2 years ago
- ☆67Updated 4 years ago
- Neural networks for deep mutational scanning data☆66Updated this week
- ☆42Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆20Updated this week
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year
- Parametric Building of de novo Functional Topologies☆43Updated 2 years ago
- ☆19Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆77Updated 7 months ago
- AlphaFold-initiated replica exchange protein docking☆43Updated 2 months ago
- ☆11Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 9 months ago