KyGao / ABGNN
PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
☆50Updated last year
Alternatives and similar repositories for ABGNN:
Users that are interested in ABGNN are comparing it to the libraries listed below
- SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)☆52Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆103Updated last month
- Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"☆63Updated 11 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆38Updated 5 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 9 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025☆63Updated 2 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆59Updated 2 weeks ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆89Updated 2 years ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆82Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- ☆35Updated last year
- MSAGPT☆30Updated 4 months ago
- Papers about Structure-based Drug Design (SBDD)☆103Updated 3 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆95Updated last year
- ☆63Updated 2 years ago
- Official repository of ReactZyme☆27Updated 5 months ago
- PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…☆97Updated 9 months ago
- ☆39Updated 2 years ago
- ☆20Updated 2 years ago
- GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…☆46Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆64Updated 6 months ago
- ☆34Updated last week
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆88Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆34Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆53Updated 2 weeks ago
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆39Updated last year
- ☆67Updated last month
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Updated last year