PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
☆55Nov 14, 2023Updated 2 years ago
Alternatives and similar repositories for ABGNN
Users that are interested in ABGNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- ☆17Jun 3, 2024Updated 2 years ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆142Jul 16, 2025Updated 11 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆132Feb 26, 2025Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆32Feb 1, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆76Sep 2, 2020Updated 5 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆108Apr 7, 2023Updated 3 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- ☆131Sep 5, 2022Updated 3 years ago
- Tool for modelling the CDRs of antibodies☆35Nov 10, 2022Updated 3 years ago
- ☆20Feb 26, 2021Updated 5 years ago
- ☆110Apr 1, 2023Updated 3 years ago
- open source repository☆148Nov 30, 2023Updated 2 years ago
- MathFusion: Enhancing Mathematical Problem-solving of LLM through Instruction Fusion (ACL 2025)☆37Jul 16, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- [ICLR24] Better Neural PDE Solvers Through Data-Free Mesh Movers☆17Mar 20, 2024Updated 2 years ago
- Generative Language Modeling for Antibody Design☆190Oct 5, 2024Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆421Sep 3, 2023Updated 2 years ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆114May 23, 2026Updated 3 weeks ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- An awesome & curated list of docking papers☆139Jan 2, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Aug 26, 2025Updated 9 months ago
- ☆12Dec 2, 2024Updated last year
- The official implementation of dual-view molecule pre-training.☆43Nov 22, 2021Updated 4 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)☆56May 28, 2024Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆362Jun 29, 2023Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆62Jun 17, 2024Updated last year
- ☆11Jun 4, 2021Updated 5 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆101Jun 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆100Oct 15, 2024Updated last year
- ☆14Mar 2, 2023Updated 3 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Jul 8, 2024Updated last year
- AbLang: A language model for antibodies☆165Sep 22, 2023Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆24Jul 9, 2024Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆58Jul 9, 2025Updated 11 months ago
- Tool for modelling the CDRs of antibodies☆51Jan 19, 2023Updated 3 years ago